Showing : dmrcate • reset
3
votes
2
replies
484
views
limma Intercept vs No-intercept models completely changing DMR results?
limma DMRcate MethylationArray EPICV2
updated 1 day ago by 50k • written 28 days ago by • 0
1
vote
2
replies
1.1k
views
DMR.Plot shows error "Error in simpleLoess(y, x, w, span, degree = degree, parametric = FALSE, : NA/NaN/Inf in foreign function call (arg 1)"
DMRcate Gviz
updated 5 weeks ago by ▴ 180 • written 15 months ago by ▴ 10
0
votes
0
replies
110
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation DMRcate
8 weeks ago Macsue • 0
2
votes
6
replies
1.7k
views
How to get DMR for Infinium methylation EPIC v2
ChAMP DMRcate minfi
updated 8 weeks ago by ▴ 180 • written 6 months ago by ▴ 10
0
votes
2
replies
683
views
EPIC array hg38 annotation?
minfi DMRcate
3 months ago mycetes • 0
0
votes
0
replies
158
views
What is the significance of DMR in DMRcate
DMRcate
3 months ago chuanjiao6 • 0
3
votes
2
replies
308
views
Question about DMRcate
DMRcate dmrcate
4 months ago chuanjiao6 • 0
8
votes
7
replies
1.3k
views
Why is DMRcate not available for Bioconductor version 3.18?
DMRcate
written 6 months ago by ▴ 30
0
votes
5
replies
631
views
error while running DMRcate
stattistics epicarray Epigenetics DMRcate
updated 7 months ago by 66k • written 7 months ago by ▴ 10
0
votes
1
reply
776
views
DMR.plot() Error in .local(.Object, ...) : Failed to obtain 'hguid' cookie
DMRcate DMR.plot
updated 7 months ago by 3.9k • written 7 months ago by • 0
3
votes
4
replies
949
views
DMRcate design
Epigenetics EpigeneticsWorkflow DMRcate
8 months ago Jitendra ▴ 10
0
votes
1
reply
515
views
dmrcate needs at least two non-NA values to interpolate
miss DMRcate missMethyl
updated 9 months ago by ▴ 180 • written 9 months ago by • 0
2
votes
6
replies
1.1k
views
cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 13 months ago by ▴ 180 • written 13 months ago by • 0
6
votes
12
replies
1.9k
views
Error when loading DMRcate
DMRcate
15 months ago Bazingastats • 0
0
votes
0
replies
658
views
DMR.plot "Error: Too many stacks to draw"
DMRcate Gviz GV
15 months ago gilliangoobie • 0
2
votes
6
replies
1.8k
views
DMRcate
DMRcate R DMRcatedata Markdown
15 months ago yr542 • 0
0
votes
0
replies
874
views
How to increase font for gene name and increase arrow size for GVIZ's ( UcscTrack function ) track?
DMRcate Gviz
2.5 years ago Ahdee ▴ 50
0
votes
1
reply
951
views
Same error that DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate
updated 2.6 years ago by 66k • written 2.6 years ago by ▴ 30
0
votes
2
replies
1.0k
views
DMRcate: how to compare two comparisons and whether replicate is necessary
DMRcate WGBS biological_replicate
2.7 years ago xie186 • 0
0
votes
6
replies
1.3k
views
Find genes in pathways enrichment
dmrcate enrichment analysis epic array goregion missmethyl
updated 2.9 years ago by ▴ 10 • written 3.9 years ago by ▴ 10
1
vote
2
replies
1.5k
views
DMRcate extractRanges error
DMRcate
3.3 years ago • updated 3.2 years ago macsue.jacques ▴ 10
0
votes
0
replies
765
views
DMRcate shows incorrect overlapping non-coding RNA genes
DMRcate
3.5 years ago Mike ▴ 10
3
votes
4
replies
1.1k
views
Is it possible to run DMRcate directly with genomic positions instead of probe names?
DMRcate
updated 3.7 years ago by ▴ 180 • written 3.7 years ago by ▴ 10
0
votes
2
replies
809
views
The smoothed Y statistic is far elevated from limma Y statistic, and parameter "betacutoff" never used
dmrcate
3.8 years ago zh9118 • 0
4
votes
9
replies
3.1k
views
DMRcate Error in if (nsig == 0) { : missing value where TRUE/FALSE needed
DMRcate differencial methylation
updated 2.6 years ago by ▴ 30 • written 4.0 years ago by ▴ 10
1
vote
8
replies
1.9k
views
extract CpGs from DMRcate results
dmrcate cpgs results.ranges DMRcate
updated 4.0 years ago by ▴ 180 • written 4.0 years ago by ▴ 40
3
votes
5
replies
1.4k
views
DMRcate: Cpgids in DMR
methylation Epic annotation DMRcate
updated 4.6 years ago by 66k • written 4.7 years ago by ▴ 10
0
votes
3
replies
1.4k
views
Significant DMRs in genes with no single significant CpG using limma
DMRcate
updated 4.8 years ago by ▴ 180 • written 4.8 years ago by • 0
0
votes
2
replies
1.2k
views
cpg.annotate model requirements
DMRcate ChAMP
updated 4.9 years ago by ▴ 290 • written 4.9 years ago by • 0
1
vote
3
replies
1.3k
views
DMRcate liftover to grch38
hg19 liftover matrixeqtl DMRcate
updated 5.0 years ago by 66k • written 5.0 years ago by ▴ 10
2
votes
18
replies
5.0k
views
DMRcate results cg ID of significant DMR
dmrcate
updated 5.9 years ago by • 0 • written 8.0 years ago by ▴ 160
0
votes
3
replies
1.6k
views
DMRcate package :How to find the gene associated with coordinate
dmrcate gene symbol coordinate
5.9 years ago 574233829 • 0
2
votes
6
replies
1.9k
views
Bumphunting for longitudinal data
bumphunter minfi lmer dmrcate dmr analysis
updated 6.1 years ago by ▴ 180 • written 6.1 years ago by • 0
0
votes
3
replies
1.9k
views
error in champ.DMR using DMRcate (v2.8.3)
champ dmrcate IlluminaHumanMethylationEPICanno.ilm10b2.hg19
updated 6.9 years ago by ▴ 90 • written 6.9 years ago by • 0
1
vote
2
replies
1.6k
views
DMRcate results file ordered by genomic location and not Stouffer p-val?
DMRcate dmrcate methylation
updated 7.0 years ago by ▴ 180 • written 7.0 years ago by • 0
1
vote
3
replies
1.5k
views
coef in dmrcate
dmrcate bumphunter methylation epic
updated 7.1 years ago by 66k • written 7.1 years ago by ▴ 10
0
votes
11
replies
3.9k
views
bug in cpg.annotate() and DMR.plot: bad defaults for what and arraytype arguments
DMRcate minfi
updated 4 months ago by ▴ 180 • written 7.2 years ago by ★ 2.0k
1
vote
10
replies
3.1k
views
minfi, lumi, methylumi, DMRcate installation error
minfi lumi methylumi dmrcate illuminahumanmethylation450kanno.ilmn12.hg19
updated 7.2 years ago by ▴ 180 • written 7.2 years ago by ▴ 10
0
votes
1
reply
1.5k
views
DMRcate: Scaling factor for bandwidth
dmrcate dmr analysis dmr
updated 7.3 years ago by ▴ 180 • written 7.3 years ago by ▴ 10
0
votes
2
replies
1.5k
views
DMRcate DMR.plot Turn Off Group Means
dmrcate visualization
updated 7.4 years ago by ▴ 180 • written 7.4 years ago by • 0
1
vote
2
replies
1.2k
views
DMRcate error in extractCoords function
software error DMRcate extractRanges
updated 7.4 years ago by ▴ 180 • written 7.4 years ago by ▴ 10
0
votes
1
reply
999
views
Betacutoff is not used in dmrcate function.
DMRcate
updated 7.4 years ago by ▴ 180 • written 7.4 years ago by • 0
0
votes
9
replies
19k
views
dmrcate(): Error in `$<-.data.frame`(`*tmp*`, "sig", value = logical(0)) : replacement has 0 rows, data has 1963
dmrcate
updated 7.4 years ago by ▴ 180 • written 7.6 years ago by • 0
1
vote
15
replies
2.3k
views
DMRcate results meanpvals
dmrcate
updated 7.9 years ago by ▴ 180 • written 7.9 years ago by ▴ 160
0
votes
1
reply
998
views
conflicts in chromosome number
DMRcate
updated 7.9 years ago by ▴ 180 • written 7.9 years ago by • 0
2
votes
2
replies
1.7k
views
DMRcate error: object 'annotated' not found
dmrcate error
updated 8.5 years ago by ▴ 180 • written 8.5 years ago by • 0
0
votes
5
replies
2.2k
views
DMRcate cpg.annotate error: "Error in data.frame"
dmrcate
8.5 years ago par.larsson • 0
2
votes
2
replies
2.4k
views
DMRcate cpg.annotate error
dmrcate design matrix
updated 8.5 years ago by ▴ 180 • written 8.5 years ago by ▴ 160
1
vote
1
reply
1.5k
views
DMRcate: phenotype variable with multiple levels
dmr analysis dmrcate
updated 8.8 years ago by ▴ 370 • written 8.8 years ago by • 0
0
votes
3
replies
3.1k
views
DMRcate: incorporating covariates to find DMRs in methylation data?
limma illimina 450k methylation DMRcate
updated 9.1 years ago by ▴ 180 • written 9.1 years ago by ▴ 120
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to compare subset of samples from VCF files by Gordon Smyth 50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files by Marco • 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database by James W. MacDonald 66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database by luigi.faino • 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database by James W. MacDonald 66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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