Showing : canceR • reset
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heatmap.2 - change column & row locations; angle / rotate
Cancer Cancer
written 10.6 years ago by ▴ 10
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1
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561
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BioC packages in cancer genomics
genomics cancer
updated 15 months ago by ★ 3.9k • written 15 months ago by ▴ 670
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0
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611
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Job: Postdoctoral Fellow – Computational Biology (Genetic Interactions in Cancer)
geneticinteractions cancer networks machine_learning
15 months ago Colm • 0
0
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0
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734
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
cancer bioinformatics proteomics genomics phd
18 months ago DKFZ International PhD Program ▴ 10
1
vote
0
replies
794
views
Job: Research Fellow in Prostate Cancer Proteomics (Bioinformatics/Stats/Data Analysis) - University of St Andrews
Multiomics Proteomics Cancer Statistics Bioinformatics
22 months ago Andy Lynch ▴ 120
0
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0
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765
views
Calculating tumour purity having only CNA data
PureCN CNA purity cancer
23 months ago JAcky • 0
0
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0
replies
768
views
Job: Postdoc position - Genetic epi/statistical genetics
GWAS cancer biomarkers PRS
24 months ago Sarah • 0
0
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1
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1.2k
views
An ESR essay about software design, and how it applies to Bioconductor
GUI Cancer GUI Cancer
written 20.3 years ago by ▴ 810
1
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759
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Job: PhD Positions in Computational Research, Data Science and Artificial Intelligence at the German Cancer Research Center (DKFZ)
phd cancer genomics proteomics bioinformatics
2.1 years ago DKFZ International PhD Program ▴ 10
0
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1
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728
views
WGCNA
Cancer
updated 2.5 years ago by ▴ 780 • written 2.5 years ago by • 0
0
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0
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855
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Job: Computational Biology Lab Head, Brain Cancer Centre, Melbourne, Australia
australia cancer wehi
3.1 years ago • updated 2.7 years ago Gordon Smyth 50k
0
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0
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873
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Job: Cancer Bioinformatician @ University of East Anglia - Norwich Medical School, UK
cancer postdoc biomarkers Biobase
3.2 years ago Daniel Brewer ▴ 100
0
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0
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931
views
Job: Senior Research Associate in Bioinformatics @ University of East Anglia - Norwich Medical School, UK
Biobase bioinformatics biomarkers cancer
3.5 years ago Daniel Brewer ▴ 100
0
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0
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965
views
Job: Postdoctoral Data Scientist @ Oxford University, UK
Cancer CancerSubtypes postdoc
3.6 years ago Daniel Brewer ▴ 100
2
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13
replies
1.4k
views
Sample size imbalance in a multi-regional experiment
deseq2 cancer
updated 3.7 years ago by 42k • written 3.7 years ago by • 0
4
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7
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1.5k
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Limma sample groups
microarray limma affy cancer
updated 3.7 years ago by 50k • written 3.7 years ago by • 0
0
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5
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2.1k
views
TCGA: to extract clinical data from barcode
cancer TCGAbiolinks
updated 3.7 years ago by ★ 3.9k • written 3.7 years ago by ▴ 10
1
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6
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2.2k
views
TCGA: clinical data and expression data
microarray annotation cancer
updated 16 months ago by • 0 • written 3.7 years ago by • 0
0
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5
replies
2.0k
views
Differential expression analysis of multiple RNA-seq datasets using DESeq2
deseq2 cancer
updated 3.7 years ago by 42k • written 3.7 years ago by • 0
0
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0
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845
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Job: Senior Postdoc/Bioinformatician Research Fellow @ UEA, Norwich, UK - New deadline
cancer nextgenerationsequencing prostate Job
4.3 years ago • updated 3.9 years ago Daniel Brewer ▴ 100
4
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10
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2.6k
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how to analyze WGCNA results?
cancer probe deseq2 annotation normalization
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by ▴ 10
1
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2
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3.9k
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Partial NA coefficients for 10 probe(s) Limma
limma microarray cancer
updated 4.1 years ago by ★ 3.9k • written 4.2 years ago by • 0
0
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3
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1.3k
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Topgo, Deseq and KEGG pathway
annotation cancer
updated 4.1 years ago by 3.9k • written 4.1 years ago by • 0
0
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1
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1.0k
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WGCNA analysis on RNAseq and proteoimcs data
cancer
updated 4.2 years ago by ★ 3.0k • written 4.2 years ago by • 0
0
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0
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1000
views
Job: Computational Biology & Bioinformatics Postdoctoral Research Associate / Research Assistant (Fixed Term) in (Epi)Genomic Regulation of Cancer @ Unive…
cancer computational biology bioinformatics epigenetics Job
4.3 years ago Shamith.Samarajiwa ▴ 180
0
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0
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892
views
Job: Data Sciences Statistician - Dana-Farber Cancer Institute
job data science biostatistics bioinformatics cancer Job
4.3 years ago Patrick Kimes ▴ 10
0
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0
replies
965
views
Job: postdoc position in computational cancer biology in Milan, Italy
cancer networks genomics epigenomics Job
4.5 years ago • updated 4.4 years ago marschaefer • 0
0
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0
replies
691
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Methylmix results are a bit different from beta values results
cancer methylmix methylation betavalues DMvalues
4.4 years ago luciomora8 • 0
0
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0
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854
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Job: Part-time postdoc in Bioinformatics (0.5 FTE) @ UEA, Norwich, UK
cancer biomarkers bioinformatician Job
4.5 years ago Daniel Brewer ▴ 100
2
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3
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1.2k
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DESeq2: DE Analysis with very imbalanced samples per condition
deseq2 cancer
updated 4 months ago by • 0 • written 4.5 years ago by • 0
0
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0
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578
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miRNA and drugs
cancer
4.6 years ago maria.k.pagoni • 0
1
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0
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1.1k
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Job: PhD Studentship in Computational Biology and Machine Learning @ University of Cambridge (application deadline November 15th 2019)
cancer genomics deep learning computational biology Job
4.7 years ago • updated 4.6 years ago Shamith.Samarajiwa ▴ 180
1
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0
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1.0k
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Job: Research Assistant/Research Associate in Machine Learning and Computational Biology (fixed-term - closing date is Sunday 20th October 2019) @ Univers…
deep-learning cancer immunotherapy computational biology Job
4.7 years ago • updated 4.6 years ago Shamith.Samarajiwa ▴ 180
0
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0
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883
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Job: Bolzano, Italy: Post Doc Researcher in bioinformatics of cancer epigenomics
cancer Job
4.6 years ago Johannes Rainer ★ 2.0k
1
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4
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1.3k
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Identify recurrent isoform switches using IsoformSwitchAnalyzeR in multiple rectal tumor samples
cancer Isoform limma IsoformSwitchAnalyzeR
updated 4.6 years ago by ▴ 120 • written 4.6 years ago by • 0
2
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1
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2.4k
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How to perform a differential expression analysis from TCGA file EBPlusPlusAdjustPANCAN_IlluminaHiSeq_RNASeqV2.geneExp.tsv
cancer limma deseq2
updated 4.7 years ago by ▴ 830 • written 4.7 years ago by ▴ 20
0
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0
replies
773
views
Job: Bioinformatician @ University of Cambridge
cancer bioinformatics R Job
4.7 years ago Shamith.Samarajiwa ▴ 180
0
votes
0
replies
928
views
Output GenVisR mutation frequency data by gene name instead of by sample name
GenVisR mutation frequency R cancer bioconductor
4.7 years ago sheneicechang • 0
0
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0
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708
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News: Bay area Biotech-Pharma Statistics Workshop, with free R user meetup (Nov 6-8)
cancer meetup News
4.7 years ago Ning Leng • 0
0
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5
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1.9k
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RNA-seq time course analysis with only one experimental condition
deseq2 cancer rna-seq time-series
4.9 years ago mah19 • 0
0
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0
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831
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MatchGenes in Bumphunter - result list with multiple genes
cancer
4.9 years ago hanna_engqvist • 0
1
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0
replies
1.5k
views
Job: Research Assistant position (Fixed Term -12 months initially - application deadline 9th June) in Machine Learning & Computational Cancer Genomics @ …
cancer deep learning genomics Job
5.1 years ago • updated 5.0 years ago Shamith.Samarajiwa ▴ 180
0
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0
replies
866
views
Job: Post-doctoral Fellow - Aparicio Lab @ BC Cancer Research Center, Vancouver BC Canada
single cell genome cancer Job
5.0 years ago jmaanaki • 0
0
votes
2
replies
936
views
Chromosomal location mapping for miRNAs
cancer
updated 5.0 years ago by 66k • written 5.0 years ago by ▴ 10
0
votes
3
replies
989
views
Is Background Correction necessary before DESeq analysis
deseq2 cancer
updated 5.0 years ago by 42k • written 5.0 years ago by • 0
1
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4
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1.0k
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DESeq2:Why is there an oblique line in my MA picture, which happened before, what caused this?
deseq2 cancer
updated 5.0 years ago by 42k • written 5.0 years ago by • 0
4
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1
reply
8.8k
views
WGCNA-unable to install GO.db package
go cancer
updated 5.1 years ago by 25k • written 5.1 years ago by ▴ 20
0
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1
reply
781
views
Help installing netReg
netReg cancer
5.1 years ago sbrackett007 • 0
2
votes
4
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1.2k
views
SCAN.UPC : lost too many samples from GSE (BrainArray + ConvThreshold)
SCAN.UPC probe normalization GEOdata cancer
5.2 years ago • updated 5.1 years ago s.goncalvesclaro ▴ 10
0
votes
0
replies
861
views
Job: Summer Studentships in Data Science & Computational Biology (2019) at the University of Cambridge
R Python Computational-Biology Cancer Job
5.2 years ago Shamith.Samarajiwa ▴ 180
50 results • Page 1 of 1
Recent ...
Replies
Comment: How to compare subset of samples from VCF files by Gordon Smyth 50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files by Marco • 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database by James W. MacDonald 66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database by luigi.faino • 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database by James W. MacDonald 66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
Awards • All
Popular Question to Gordon Smyth 50k
Popular Question to Marco Blanchette ▴ 30
Popular Question to Fred Hutch (Recruiting) ▴ 40
Scholar to James W. MacDonald 66k
Popular Question to Levi Waldron ★ 1.1k
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