Showing : transcriptomics • reset
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Filtering Steps for proActiv Analysis
Transcriptomics proActiv
23 days ago LuciaNhu • 0
1
vote
6
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687
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New to Deseq2 - DEG questions / MA plot
genomes DESeq2 Transcriptomics
updated 4 weeks ago by ★ 4.5k • written 8 weeks ago by • 0
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0
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219
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proActiv-promoter analysis
proActiv Transcriptomics
3 months ago wang.xiangyu • 0
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330
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Job: Postdoctoral fellowships in Spatial Omics and Single Cell Genomics at the University of Padova (IT)
SingleCell Transcriptomics SpatialDatasets SpatialData
5 months ago Silvio • 0
3
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2
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462
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How to extract counts from a DESeq dataset ordered by a specific sample?
DESeq2 Transcriptomics
8 months ago Anita ▴ 10
4
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5
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2.4k
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DESeq2, time-course interpretation
Transcriptomics TimeCourse DESeq2
updated 16 months ago by 42k • written 16 months ago by • 0
0
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4
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985
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problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
18 months ago sreeshmaraj72 • 0
0
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1
reply
506
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Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 19 months ago by 42k • written 19 months ago by • 0
4
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5
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2.6k
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EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics EnhancedVolcano
updated 19 months ago by ★ 4.0k • written 19 months ago by ▴ 20
4
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8
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1.8k
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DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts normalization?
DESeq2 Transcriptomics
updated 19 months ago by ★ 13k • written 19 months ago by ▴ 20
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3
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1.0k
views
Understanding edgeR differential expression results
Transcriptomics edgeR DifferentialExpression RNASeqData RNASeq
updated 21 months ago by 51k • written 21 months ago by • 0
0
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1
reply
944
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Is it possible to convert transcript-level to gene-level dataset to use it in DESeq2 ?
DESeq2 Transcriptomics tximport deseq txi
updated 22 months ago by ★ 1.5k • written 22 months ago by ▴ 10
0
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1
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2.0k
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Variance stabilization transformation (VST), blind=TRUE
DESeq2 Transcriptomics RNASeq
updated 22 months ago by 42k • written 22 months ago by • 0
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0
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719
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Analysis of TIF-seq data to generate transcription start sites (TSS) and poly(A) site (PAS) clusters
Transcriptomics SequencingData
2.0 years ago Rom • 0
0
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824
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Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
2.0 years ago whduke • 0
0
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2
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866
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Questions about `collapseReplicates` function in DESeq2
DESeq2 Transcriptomics
2.1 years ago Yijing • 0
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0
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673
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WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network Transcriptomics MicrobiomeData RNASEQ WCGNA
2.2 years ago Julieta • 0
2
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1
reply
2.5k
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Understanding tximport working with salmon outputs
Transcriptomics tximport
updated 2.2 years ago by ★ 4.5k • written 2.2 years ago by ▴ 10
0
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3
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1.3k
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DESeq2 - transcript length correction necessary when quantifying reads from ends of transcripts?
Transcriptomics DESeq2
2.3 years ago marius.wenzel • 0
4
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6
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1.7k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
2.5 years ago mohammedtoufiq91 ▴ 10
1
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3
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1.4k
views
Identifying DEG between development stages
plant Transcriptomics DESeq2 r
updated 2.7 years ago by ▴ 780 • written 2.7 years ago by • 0
2
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5
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1.6k
views
DESeq2 with baseline correction for gene expression differences
DESeq2 edgeR Transcriptomics
updated 2.7 years ago by 42k • written 2.7 years ago by • 0
2
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2
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1.0k
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Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
3.1 years ago • updated 18 months ago diangomaiga • 0
1
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2
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1.6k
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Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
3.3 years ago • updated 3.2 years ago Barista • 0
0
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0
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1.1k
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Job: Senior Bioinformatician - University of Alabama at Birmingham
JobPosting Transcriptomics SingleCell RNA-seq
3.3 years ago lianov • 0
0
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0
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995
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Job: [apply by 8/15] PhD scholarship on functional and evolutionary genomics
JobPosting Transcriptomics GenomicVariation
3.4 years ago marie • 0
0
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2
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1.3k
views
Downloading org.Mm.eg.db after R reinstall
org.Mmu.eg.db Transcriptomics
3.6 years ago Kate • 0
0
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0
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1.1k
views
Consensus wgcna soft threshold for each data
Transcriptomics WGCNA wgcna
3.7 years ago 2323982403 ▴ 60
0
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1
reply
919
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Metatranscriptomics DESeq2 multifactorial sampling
Transcriptomics DESeq2
updated 3.7 years ago by 42k • written 3.7 years ago by • 0
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1.1k
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Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
3.7 years ago m.jackson • 0
5
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5
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3.1k
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analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
GEO RNASeqR Transcriptomics
updated 3.7 years ago by 67k • written 3.7 years ago by ▴ 10
0
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0
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1.1k
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Job: Computational Biologist at Denali Therapeutics
Transcriptomics SingleCell JobPosting
3.9 years ago Steve Lianoglou ★ 13k
1
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1
reply
1.1k
views
NanoStringDiff Not Recognized as Numeric
Bioconductor Transcriptomics NanoStringDiff
updated 4.1 years ago by 1.6k • written 4.1 years ago by ▴ 10
0
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0
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844
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Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
4.6 years ago raquelponti • 0
1
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0
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1.2k
views
News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq course proteomics transcriptomics scrnaseq News
4.8 years ago Laurent Gatto 1.6k
0
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4
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1.2k
views
GOexpress - Error when plotting expression data
RNA-seq transcriptomics gene ontology gene expression GOexpress
updated 4.8 years ago by ▴ 350 • written 4.8 years ago by • 0
0
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0
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1.1k
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Job: Bioinformatics Scientist, CNS Transcriptomics at Alnylam Pharmaceuticals, Cambridge MA, USA
scRNA-seq CNS transcriptomics RNAi Job
4.9 years ago Joseph Barry ▴ 10
0
votes
0
replies
888
views
Job: Bionformatician in personalized oncotherapy (BEL)
job bioinformatician immunotherapy genomics transcriptomics Job
5.0 years ago cedric • 0
1
vote
0
replies
1.0k
views
Job: Bioinformatics PhD: The circadian clock in the ageing plant, University of York, UK
transcriptomics gene expression time series plant biology circadian Job
5.1 years ago dezer ▴ 10
2
votes
2
replies
3.6k
views
How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 5.1 years ago by 51k • written 5.1 years ago by ▴ 10
2
votes
0
replies
2.5k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
5.2 years ago Laurent Gatto 1.6k
1
vote
1
reply
1.1k
views
cpm filtering parameter
cpm filtering transcriptomics rnaseq edgeR metatranscriptomics
updated 5.2 years ago by 51k • written 5.2 years ago by ▴ 10
0
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0
replies
1.1k
views
Job: Bionformatician Position / Heidelberg
neuroscience data integration transcriptomics Job
5.7 years ago • updated 5.6 years ago slezak • 0
0
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0
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925
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
5.6 years ago Wuschel ▴ 10
1
vote
0
replies
1.7k
views
Job: Full time and permanent research logistician in Bioinformatics
transcriptomics proteomics job bioinformatician Job
5.7 years ago Laurent Gatto 1.6k
1
vote
1
reply
1.6k
views
News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq deseq2 proteomics transcriptomics workshop News
written 5.7 years ago by 1.6k
3
votes
4
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1.5k
views
Writing a loop to clean up protein names
Proteomics Transcriptomics Loops batch-processing R
updated 6.1 years ago by ▴ 80 • written 6.1 years ago by • 0
47 results • Page 1 of 1
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Comment: Differene between the Wald and LRT test for time-series gene expression data by Denise • 0
This makes a lot of sense, thank you very much!
Comment: Downloading Metagenomic Data with Higher Taxonomic Units by elozanoe • 0
Hi! I'm facing the same problem. Is there any easy way to output relative abundances of higher taxonomic units (up to kingdom), similar to…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
A: correcting the batch effects in Limma and SVA
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
A: Using of limma moderated t-test with "corrected" expression matrix resulting fr
Answer: Differene between the Wald and LRT test for time-series gene expression data
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
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