Showing : transcriptomics • reset
0
votes
3
replies
616
views
DESeq2 analysis with transcript counts
Transcriptomics RNASeq DESeq2
written 3 months ago by • 0
0
votes
0
replies
161
views
Filtering Steps for proActiv Analysis
Transcriptomics proActiv
5 months ago LuciaNhu • 0
1
vote
6
replies
1.2k
views
New to Deseq2 - DEG questions / MA plot
genomes DESeq2 Transcriptomics
updated 5 months ago by ★ 4.8k • written 6 months ago by • 0
0
votes
0
replies
315
views
proActiv-promoter analysis
proActiv Transcriptomics
8 months ago wang.xiangyu • 0
0
votes
0
replies
504
views
Job: Postdoctoral fellowships in Spatial Omics and Single Cell Genomics at the University of Padova (IT)
SingleCell Transcriptomics SpatialDatasets SpatialData
10 months ago Silvio • 0
3
votes
2
replies
571
views
How to extract counts from a DESeq dataset ordered by a specific sample?
DESeq2 Transcriptomics
12 months ago Anita ▴ 10
4
votes
5
replies
3.2k
views
DESeq2, time-course interpretation
Transcriptomics TimeCourse DESeq2
updated 21 months ago by 43k • written 21 months ago by • 0
0
votes
4
replies
1.1k
views
problem while retriving the genes by using p value and log2fc as conditions
Bioconductor Transcriptomics DifferentialExpression DESeq2
22 months ago sreeshmaraj72 • 0
0
votes
1
reply
580
views
Time change in expression vs time change in phenotype
Transcriptomics ExpressionData DESeq2
updated 24 months ago by 43k • written 24 months ago by • 0
4
votes
5
replies
3.1k
views
EnhancedVolcano - Unable to customize the length of Connectors to Gene Labels
Transcriptomics EnhancedVolcano
updated 24 months ago by ★ 4.0k • written 24 months ago by ▴ 20
4
votes
8
replies
2.3k
views
DESEQ2 - What is the recommended workflow in terms of pre-filtering and counts normalization?
DESeq2 Transcriptomics
updated 2.0 years ago by ★ 13k • written 2.0 years ago by ▴ 20
0
votes
3
replies
1.2k
views
Understanding edgeR differential expression results
Transcriptomics edgeR DifferentialExpression RNASeqData RNASeq
updated 2.1 years ago by 52k • written 2.1 years ago by • 0
0
votes
1
reply
1.1k
views
Is it possible to convert transcript-level to gene-level dataset to use it in DESeq2 ?
DESeq2 Transcriptomics tximport deseq txi
updated 2.2 years ago by ★ 1.6k • written 2.2 years ago by ▴ 10
0
votes
1
reply
2.5k
views
Variance stabilization transformation (VST), blind=TRUE
DESeq2 Transcriptomics RNASeq
updated 2.2 years ago by 43k • written 2.3 years ago by • 0
0
votes
0
replies
830
views
Analysis of TIF-seq data to generate transcription start sites (TSS) and poly(A) site (PAS) clusters
Transcriptomics SequencingData
2.4 years ago Rom • 0
0
votes
0
replies
898
views
Job: EPA Postdoctoral Fellowship in Bioinformatics and Computational Toxicology
MethylSeq Transcriptomics Pathways Epigenetics RNASeq
2.4 years ago whduke • 0
0
votes
2
replies
939
views
Questions about `collapseReplicates` function in DESeq2
DESeq2 Transcriptomics
2.5 years ago Yijing • 0
0
votes
0
replies
771
views
WCGNA: Using Eigengenes when correlating modules to external features? What about PC2, PC3???
Network Transcriptomics MicrobiomeData RNASEQ WCGNA
2.6 years ago Julieta • 0
3
votes
1
reply
3.2k
views
Understanding tximport working with salmon outputs
Transcriptomics tximport
updated 2.6 years ago by ★ 4.8k • written 2.6 years ago by ▴ 10
0
votes
3
replies
1.5k
views
DESeq2 - transcript length correction necessary when quantifying reads from ends of transcripts?
Transcriptomics DESeq2
2.7 years ago marius.wenzel • 0
4
votes
6
replies
2.0k
views
How to best visualize multi-level transcriptomics experiment data?
ggplot2 Transcriptomics Visualization R limma
2.9 years ago mohammedtoufiq91 ▴ 10
1
vote
3
replies
1.6k
views
Identifying DEG between development stages
plant Transcriptomics DESeq2 r
updated 3.1 years ago by ▴ 780 • written 3.1 years ago by • 0
2
votes
5
replies
1.7k
views
DESeq2 with baseline correction for gene expression differences
DESeq2 edgeR Transcriptomics
updated 3.1 years ago by 43k • written 3.1 years ago by • 0
2
votes
2
replies
1.1k
views
Deseq2 Resul variation by LFC variation
rnaseqGene DESeq2 Transcriptomics
3.5 years ago • updated 23 months ago diangomaiga • 0
1
vote
2
replies
1.7k
views
Not many DE genes using glmTreat
EdgeR Bioinformatics Transcriptomics Quantseq
3.6 years ago Barista • 0
0
votes
0
replies
1.2k
views
Job: Senior Bioinformatician - University of Alabama at Birmingham
JobPosting Transcriptomics SingleCell RNA-seq
3.7 years ago lianov • 0
0
votes
0
replies
1.1k
views
Job: [apply by 8/15] PhD scholarship on functional and evolutionary genomics
JobPosting Transcriptomics GenomicVariation
3.7 years ago marie • 0
0
votes
2
replies
1.6k
views
Downloading org.Mm.eg.db after R reinstall
org.Mmu.eg.db Transcriptomics
4.0 years ago Kate • 0
0
votes
0
replies
1.2k
views
Consensus wgcna soft threshold for each data
Transcriptomics WGCNA wgcna
4.1 years ago 2323982403 ▴ 60
0
votes
1
reply
1.0k
views
Metatranscriptomics DESeq2 multifactorial sampling
Transcriptomics DESeq2
updated 4.1 years ago by 43k • written 4.1 years ago by • 0
0
votes
0
replies
1.2k
views
Job: Bioinformatician at MiroBio, Oxford, UK
Transcriptomics Bioconductor Statistics Job Biocon
4.1 years ago m.jackson • 0
5
votes
5
replies
3.8k
views
analyzing RNA-Seq transcriptomic data (GEO accession: GSE96058)
GEO RNASeqR Transcriptomics
updated 4.1 years ago by 68k • written 4.1 years ago by ▴ 10
0
votes
0
replies
1.3k
views
Job: Computational Biologist at Denali Therapeutics
Transcriptomics SingleCell JobPosting
4.3 years ago Steve Lianoglou ★ 13k
1
vote
1
reply
1.2k
views
NanoStringDiff Not Recognized as Numeric
Bioconductor Transcriptomics NanoStringDiff
updated 4.5 years ago by 1.6k • written 4.5 years ago by ▴ 10
0
votes
0
replies
922
views
Problems with cummeRbund
plot transcriptomics differential expression cummeRbund
5.0 years ago raquelponti • 0
1
vote
0
replies
1.2k
views
News: News: Bioinformatics Summer School - July 2020 - UCLouvain (Belgium)
rnaseq course proteomics transcriptomics scrnaseq News
5.2 years ago Laurent Gatto 1.6k
0
votes
4
replies
1.4k
views
GOexpress - Error when plotting expression data
RNA-seq transcriptomics gene ontology gene expression GOexpress
updated 5.2 years ago by ▴ 350 • written 5.2 years ago by • 0
0
votes
0
replies
1.2k
views
Job: Bioinformatics Scientist, CNS Transcriptomics at Alnylam Pharmaceuticals, Cambridge MA, USA
scRNA-seq CNS transcriptomics RNAi Job
5.3 years ago Joseph Barry ▴ 10
0
votes
0
replies
965
views
Job: Bionformatician in personalized oncotherapy (BEL)
job bioinformatician immunotherapy genomics transcriptomics Job
5.4 years ago cedric • 0
1
vote
0
replies
1.1k
views
Job: Bioinformatics PhD: The circadian clock in the ageing plant, University of York, UK
transcriptomics gene expression time series plant biology circadian Job
5.5 years ago dezer ▴ 10
2
votes
2
replies
4.1k
views
How adjusted p-values are calculated in limma
limma r transcriptomics FDR statistics
updated 5.5 years ago by 52k • written 5.5 years ago by ▴ 10
2
votes
0
replies
2.6k
views
Job: Bioconductor infrastructure for the integration of genomics, transcriptomics and proteomics data
proteomics genomics transcriptomics software Job
5.5 years ago Laurent Gatto 1.6k
1
vote
1
reply
1.2k
views
cpm filtering parameter
cpm filtering transcriptomics rnaseq edgeR metatranscriptomics
updated 5.6 years ago by 52k • written 5.6 years ago by ▴ 10
0
votes
0
replies
1.2k
views
Job: Bionformatician Position / Heidelberg
neuroscience data integration transcriptomics Job
6.0 years ago slezak • 0
0
votes
0
replies
1.0k
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
6.0 years ago Wuschel ▴ 10
1
vote
0
replies
1.8k
views
Job: Full time and permanent research logistician in Bioinformatics
transcriptomics proteomics job bioinformatician Job
6.1 years ago • updated 6.0 years ago Laurent Gatto 1.6k
1
vote
1
reply
1.7k
views
News: Bioinformatics Summer School - July 2019 - UCLouvain (Belgium)
RNAseq deseq2 proteomics transcriptomics workshop News
written 6.1 years ago by 1.6k
3
votes
4
replies
1.7k
views
Writing a loop to clean up protein names
Proteomics Transcriptomics Loops batch-processing R
updated 6.5 years ago by ▴ 80 • written 6.5 years ago by • 0
48 results • Page 1 of 1
Recent ...
Replies
Answer: fast apply on RleList by story.benjamin ▴ 20
solved with viewApply (code is simplified below) + map reduce on chrs test.split <- split(test.gr,seqnames(test.gr)) final.st…
Comment: fast apply on RleList by story.benjamin ▴ 20
Hi James, thanks for the reply. I ultimately figured it out ... viewApply showed a massive speed increase for me (see other answer) - I was…
Answer: fast apply on RleList by James W. MacDonald 68k
There is already a 'mean' function that will dispatch on an `RleList` that you can use. I don't have a long `RleList` in hand to test it on…
Answer: Custom CDF creation for HTA 2.0 array using GTF annotation by James W. MacDonald 68k
It doesn't appear that Manhong Dai is working at UM any longer, and the webpage appears to have fallen into disrepair (for example, the lin…
Comment: how to use `arrayWeightsQuick()`? by matthew • 0
In the specific use-case I have in mind, `expression` is a simple `matrix` of log2 gene expression per sample, no missing values.
Votes
annotation EpicV2
Answer: fast apply on RleList
Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Awards • All
Popular Question to Ariel Chernomoretz ▴ 170
Popular Question to Shaimaa Gamal • 0
Scholar to story.benjamin ▴ 20
Popular Question to Seymoo • 0
Popular Question to pouryany • 0
Locations • All
Canada, 8 minutes ago
The city by the bay, 27 minutes ago
United Kingdom, 59 minutes ago
United States, 1 hour ago
United States, 1 hour ago
Traffic: 478 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6