Showing : metabolomics • reset
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Gene-by-sample covariates in limma
Metabolomics limma
updated 14 days ago by 50k • written 14 days ago by • 0
0
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1
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986
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How to make OPLS-DA variable importance plot
crlmm ropls Metabolomics
updated 10 months ago by 65k • written 10 months ago by • 0
0
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1
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616
views
msPurity::spectralMatching Error in getSmeta(con, pids) : No meta data for spectra available
msPurity Metabolomics Bioconductor xcms spectralMatching
updated 15 months ago by • 0 • written 19 months ago by ▴ 10
0
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1
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599
views
limma on spectral data
limma Metabolomics DifferentialExpression POMA
updated 15 months ago by 50k • written 15 months ago by • 0
0
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1
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590
views
What does it mean when the permI set to different values give the same result
Metabolomics ropls
updated 16 months ago by ▴ 40 • written 16 months ago by • 0
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2
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732
views
Error received in ropls package
Metabolomics ropls
updated 17 months ago by ▴ 40 • written 18 months ago by • 0
0
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2
replies
836
views
OPLS-DA: confidence interval for accuracy metric
Metabolomics
21 months ago Eddie • 0
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0
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459
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Negative Q2Y
Metabolomics
22 months ago Eddie • 0
0
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0
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628
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Plot of variable importance
Metabolomics
22 months ago Eddie • 0
0
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1
reply
690
views
Code for the Q2Ys from permutation test
Metabolomics
updated 23 months ago by ▴ 40 • written 23 months ago by • 0
16
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12
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2.4k
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VST transformation (DESeq2) for metabolomics data
vst Metabolomics DESeq2
2.1 years ago • updated 2.0 years ago Joan Miró ▴ 80
0
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5
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1.7k
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ROC plot for OPLS-DA
Metabolomics
updated 23 months ago by ▴ 40 • written 2.1 years ago by • 0
0
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4
replies
2.1k
views
OPLS-DA: values of pR2Y and pR2Q
Metabolomics
2.2 years ago • updated 23 months ago Eddie • 0
0
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1
reply
1.3k
views
OPLS-DA permutation test
Metabolomics
updated 2.1 years ago by ▴ 40 • written 2.1 years ago by • 0
0
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1
reply
852
views
OPLS-DA for paired samples
Metabolomics
updated 2.1 years ago by ▴ 40 • written 2.2 years ago by • 0
0
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2
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787
views
variableMetadata for metabolites dataset
Metabolomics
updated 2.1 years ago by • 0 • written 2.2 years ago by • 0
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0
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674
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Job: Director of Metabolomics, University of Illinois Urbana-Champaign
Metabolomics
2.1 years ago Jenny Drnevich ★ 2.0k
0
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1
reply
1.3k
views
Permutation test for OPLS-DA
Metabolomics
updated 2.1 years ago by ▴ 40 • written 2.2 years ago by • 0
0
votes
1
reply
1.6k
views
OPLS package with @subsetVi = numeric(0)
metabolomicsWorkbenchR PLS OPLS Metabolomics ropls
updated 2.8 years ago by ▴ 40 • written 2.8 years ago by • 0
1
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0
replies
1.6k
views
Normalization of metabolomics/lipidomics data for limma
Lipidomics Metabolomics limma Normalization
2.9 years ago pgugger ▴ 70
0
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1
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744
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compute molecular mass from chemical formula
Metabolomics
written 3.0 years ago by ▴ 10
1
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2
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1.2k
views
calculate theoretical isotope distribution give the AA sequence
Metabolomics proteomics MassSpectrometry
3.4 years ago Oliver • 0
3
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1
reply
2.3k
views
Tutorial: Mass Spectrometry Data Analysis with the Spectra Package
mass spectrometry proteomics metabolomics Tutorial
written 3.6 years ago by ★ 2.0k
2
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0
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930
views
Job: PostDoc position for the analysis of large scale metabolomics data
metabolomics proteomics Job
3.7 years ago Johannes Rainer ★ 2.0k
0
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4
replies
862
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ProFIA package error for noise estimation
software error proFIA HRMS FIA Metabolomics
updated 4.0 years ago by ★ 3.9k • written 4.0 years ago by • 0
1
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0
replies
800
views
Job: Metabolomics Bioinformatics Postdoc Position at Steno Diabetes Center Copenhagen
metabolomics lipidomics clinical research data integration biostatistics Job
4.3 years ago Tommi Suvitaival ▴ 10
0
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5
replies
1.3k
views
runInfo returns startTimeStamp -infinity
lcms mzR metabolomics xcms MSnbase
updated 4.7 years ago by 1.6k • written 4.7 years ago by • 0
0
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0
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791
views
How to integrate and visualize RNASeq / Proteomics data for metabolomics pathways?
r metabolomics KEGG Proteomics Transcriptomics
5.1 years ago Wuschel ▴ 10
0
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0
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1.0k
views
Job: Postdoctoral researcher in Computational Metabolomics
metabolomics xcms Job
5.2 years ago Johannes Rainer ★ 2.0k
0
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0
replies
1.4k
views
Job: Postdoctoral researcher in Computational Metabolomics
xcms metabolomics population metabolism job Job
updated 5.4 years ago by • 0 • written 5.5 years ago by ★ 2.0k
0
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0
replies
1.1k
views
'names' attribute must be the same length as the vector - PAPi problems
PAPi metabolomics pathway analysis raphael
5.8 years ago maryke.wijma • 0
0
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1
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1.5k
views
Metabolite identification package
xcms massspectrometry metabolomics
updated 6.1 years ago by ★ 2.0k • written 6.1 years ago by • 0
0
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0
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1.1k
views
Job: Postdoctoral Position: Posttranscriptional gene regulation in T cells (analysis of RNAseq, metabolomics)
Basel switzerland RNAseq metabolomics Job
6.1 years ago Robert Ivanek ▴ 730
0
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0
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1.1k
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CAMERA error - isotopeProportionFits
camera metabolomics
6.3 years ago bhgyu ▴ 30
1
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2
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1.5k
views
Package won't recognise raw data files
camera metabolomics r
6.5 years ago bhgyu ▴ 30
5
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7
replies
2.3k
views
XCMS obiwarp adjustRtime issue
xcms obiwarp adjustrtime metabolomics
updated 6.6 years ago by ★ 2.0k • written 6.6 years ago by ▴ 30
0
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1
reply
1.1k
views
MAIT or Specmine
metabolomics mait specmine mass spectrometry
6.6 years ago bhgyu ▴ 30
3
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3
replies
2.2k
views
installing xcms and faahKO package
metabolomics
updated 6.6 years ago by 1.6k • written 6.6 years ago by ▴ 10
0
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2
replies
1.7k
views
Extracting subclusters from original data
complexheatmap metabolomics
updated 6.8 years ago by ▴ 130 • written 6.8 years ago by • 0
3
votes
2
replies
3.2k
views
limma for metabolite data
limma metabolomics limma paired analysis
updated 2.5 years ago by • 0 • written 7.1 years ago by • 0
4
votes
7
replies
1.9k
views
Issues uploading database for metabolomic data analysis with Pathway Activity Profiling - PAPi
papi metabolomics pathway analysis
updated 7.2 years ago by ▴ 10 • written 8.1 years ago by ▴ 10
0
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1
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1.4k
views
findneutral xcms xcmsSet
R metabolomics LC-MS xcms readMzXmlData
updated 7.6 years ago by 65k • written 7.6 years ago by • 0
0
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1
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1.6k
views
metaMS for analysis of GC-MS data
metaMS xcms GC-MS metabolomics volatile organic compounds
updated 8.0 years ago by ▴ 20 • written 8.0 years ago by • 0
0
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6
replies
2.7k
views
Help Error could not find function xcmsSet
xcms metabolomics mzr rcpp ramp
8.1 years ago dfrtyu • 0
0
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0
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1.2k
views
fillPeaks not calculating "intb" values.
xcms metabolomics
8.2 years ago Johannes Rainer ★ 2.0k
1
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3
replies
2.6k
views
XCMS2 on MSMS data
xcms metabolomics massspectrometry lipidomics bioconductor
8.3 years ago Titan • 0
0
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3
replies
2.1k
views
Problem with XCMS
xcms metabolomics lipidomics proteomics massspectrometry
8.3 years ago Titan • 0
0
votes
4
replies
2.8k
views
XCMS for targeted metabolomic/lipidomics/proteomics
xcms metabolomics lipidomics statistics
8.4 years ago Titan • 0
0
votes
4
replies
2.8k
views
mzR could not be loaded on XCMS
xcms msdata mzR Rcpp metabolomics
8.4 years ago Titan • 0
0
votes
0
replies
1.8k
views
Job: Data scientist/bioinformatician - Paris
Genomics metabolomics biostatistics data integration Job
8.6 years ago David Enot ▴ 30
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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