Showing : topGo • reset
0
votes
5
replies
593
views
Error when running topGO with KS statistic and elim agorithm
topGO
6 months ago • updated 5 months ago A. denDekker • 0
1
vote
2
replies
837
views
Access genes associated with GO terms for a topGO object created with gene2GO
topGO
10 months ago Dan • 0
0
votes
2
replies
958
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 13 months ago by 67k • written 13 months ago by • 0
0
votes
1
reply
730
views
library(topGO) query
topGO scRNAseq
updated 16 months ago by ▴ 780 • written 16 months ago by • 0
1
vote
1
reply
766
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 19 months ago by ▴ 40 • written 19 months ago by • 0
0
votes
1
reply
1.2k
views
In .local(object, test.stat, ...) : No enrichment can pe performed - there are no feasible GO terms!
topGO
updated 19 months ago by 67k • written 19 months ago by • 0
0
votes
0
replies
617
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
19 months ago Priya • 0
1
vote
1
reply
1.5k
views
topGo error loading data
topGO GO
23 months ago peter • 0
1
vote
0
replies
1.0k
views
adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
2.2 years ago Kevin Gregory ▴ 10
0
votes
4
replies
3.5k
views
How to get significant genes annotated to go term using TopGO?
topGO
updated 2.4 years ago by ▴ 760 • written 2.4 years ago by ▴ 30
1
vote
3
replies
2.4k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.4 years ago by 67k • written 2.4 years ago by ▴ 60
0
votes
5
replies
2.7k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 2.5 years ago by 67k • written 2.5 years ago by ▴ 30
0
votes
0
replies
737
views
What exactly are Nontrivial node in topGO analysis?
topGO GO
2.6 years ago theophile • 0
0
votes
6
replies
1.7k
views
extract significant gene list from specific GO namber
topGO
updated 2.7 years ago by 67k • written 2.7 years ago by • 0
4
votes
7
replies
2.4k
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser
updated 2.8 years ago by ▴ 180 • written 2.8 years ago by • 0
0
votes
1
reply
1.4k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.2 years ago by ▴ 40 • written 3.2 years ago by • 0
0
votes
1
reply
1.0k
views
Gene ontology of differentially expressed genes in R
topGO limma DEP
updated 3.3 years ago by 67k • written 3.3 years ago by • 0
0
votes
1
reply
1.0k
views
topGo GenTable returns result column as character
GenTable topGO
updated 3.7 years ago by 67k • written 3.7 years ago by • 0
0
votes
0
replies
749
views
topGO weight01 method: potential bug in the code
topGO weight01
3.8 years ago Vladimir • 0
1
vote
3
replies
1.7k
views
topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 3.8 years ago by ▴ 760 • written 3.8 years ago by • 0
2
votes
0
replies
1.1k
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
3.8 years ago Ben ▴ 50
1
vote
1
reply
2.1k
views
TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
topGO
updated 3.8 years ago by 67k • written 3.8 years ago by • 0
2
votes
1
reply
2.2k
views
topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 3.9 years ago by ▴ 20 • written 11.7 years ago by ▴ 340
1
vote
3
replies
1.6k
views
topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 3.9 years ago by 67k • written 3.9 years ago by • 0
0
votes
0
replies
899
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
4.0 years ago Madza Farias-Virgens • 0
0
votes
7
replies
3.0k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 4.0 years ago by 51k • written 4.0 years ago by ▴ 20
0
votes
4
replies
1.3k
views
topGO "argument is of length zero" error
GO.db topGO
updated 4.1 years ago by 67k • written 4.1 years ago by • 0
1
vote
6
replies
1.8k
views
How to create geneselectionfunction in TopGO: Error in .local(.Object, ...) : allGenes should be a factor or a numeric vector
R TopGO Geneenrichment
updated 4.2 years ago by 67k • written 4.2 years ago by • 0
3
votes
4
replies
2.0k
views
Different geneset same p-values in topGO
topgo bug
7.9 years ago • updated 4.2 years ago Lluís Revilla Sancho ▴ 760
4
votes
4
replies
1.6k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 4.2 years ago by 51k • written 4.2 years ago by ▴ 120
2
votes
3
replies
1.3k
views
Error in topGO analysis
software error topGO go
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by • 0
0
votes
3
replies
1.1k
views
Use topGOdata in devtools package
topGO devtools R
updated 4.3 years ago by 67k • written 4.3 years ago by • 0
1
vote
1
reply
1.3k
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 4.4 years ago by 67k • written 4.4 years ago by ▴ 10
4
votes
8
replies
6.6k
views
topGO error: allGenes should be a factor or a numeric vector
topGO topgo GO term analysis
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by ▴ 10
4
votes
8
replies
2.7k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 22 months ago by 67k • written 4.5 years ago by ▴ 30
5
votes
7
replies
1.3k
views
Unexpected error with topGO, cannot build topGOdata object
topGO
4.6 years ago • updated 4.5 years ago abf ▴ 30
0
votes
1
reply
819
views
Missing ALL library in BiocManager using topGO
topGO
updated 4.6 years ago by 67k • written 4.6 years ago by • 0
1
vote
3
replies
1.8k
views
TopGO significant genes
TopGO GO
4.6 years ago Al-a ▴ 10
0
votes
14
replies
2.7k
views
annFUN error TOPGO
TOPGO annFUN error
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
votes
1
reply
1.0k
views
Diagnosing topGo issue - single enriched gene per enriched GO term
topGo gene enrichment ontology analysis
5.3 years ago s.bourne • 0
3
votes
3
replies
1.5k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 5.4 years ago by 67k • written 5.4 years ago by • 0
2
votes
2
replies
2.5k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 5.5 years ago by 67k • written 5.5 years ago by ▴ 60
0
votes
3
replies
1.5k
views
usage of topGO after limma
limma topGO microarray
updated 5.7 years ago by 51k • written 5.7 years ago by • 0
0
votes
0
replies
1.2k
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
5.7 years ago psutton • 0
1
vote
1
reply
1.3k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
5.8 years ago David ROUX ▴ 20
0
votes
1
reply
1.8k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
6.0 years ago natske ▴ 10
2
votes
6
replies
2.2k
views
topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment
updated 6.0 years ago by 67k • written 6.0 years ago by • 0
3
votes
9
replies
5.3k
views
topGO "invalid argument to unary operator"
software error topgo
updated 6.0 years ago by 67k • written 6.0 years ago by • 0
0
votes
0
replies
1.3k
views
topGO analysis runTest: non-numeric argument to binary operator
topGO
6.1 years ago Dave Th. • 0
0
votes
0
replies
1.4k
views
topGO: how to print GO descriptions only when using showSigOfNodes?
topgo
6.2 years ago anton.kratz ▴ 60
50 results • Page 1 of 1
Recent ...
Replies
Answer: Deseq2 res Function by Michael Love 43k
> Does this mean the young and KO groups were numerators and denominators in the analysis, respectively? Read over the vignette and work…
Answer: ANOVA like approach of edgeR by Gordon Smyth 51k
You need to clarify whether interactions are present for the two factors in your study. In the two factors do not interact, then the code y…
Answer: Create Illmina bead summary data by Gordon Smyth 51k
GenomeStudio produces IDAT files that you can read using the `read.idat` function in limma. That is the recommended way to read GenomeStudi…
Comment: Help with RSEM counts: do I transpose matrix? by NB • 0
OK thank you.
Comment: Help with RSEM counts: do I transpose matrix? by James W. MacDonald 67k
You can ask here, but please read the `DESeq2` vignette first, which should answer most questions.
Votes
Answer: Deseq2 res Function
Answer: BiocNeighbours Utility for k-Nearest Neighbour Classification
Answer: ANOVA like approach of edgeR
Answer: ANOVA like approach of edgeR
Comment: ANOVA like approach of edgeR
Awards • All
Popular Question to Gordon Smyth 51k
Popular Question to sap275 ▴ 10
Popular Question to mhem ▴ 10
Popular Question to Anna ▴ 20
Scholar to Haibo Liu ▴ 20
Locations • All
Australia, 48 minutes ago
United States, 1 hour ago
Canada, 1 hour ago
United States, 1 hour ago
The city by the bay, 2 hours ago
Traffic: 682 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6