Bioconductor Geneontology

Showing : geneontology • reset

votes

415

views

Atlanticsalmon clusterPro Salmosalar AnnotationHub GeneOntology

updated 3 months ago by Michael Love 42k • written 3 months ago by Filipe • 0

votes

replies

1.7k

views

rnaseq rnaseqGene geneontology

updated 19 months ago by James W. MacDonald 66k • written 19 months ago by acram • 0

vote

replies

879

views

microRNA gene RNASeqRData edgeR geneontology

19 months ago faiza • 0

votes

replies

574

views

GO GeneOntology LocusIDtogeneIDconversion

20 months ago BioinFo.X • 0

vote

replies

1.8k

views

Annotation GeneOntology topGO GO

updated 23 months ago by James W. MacDonald 66k • written 24 months ago by Raito92 ▴ 60

vote

replies

936

views

GOstats Go.db GeneOntology

3.2 years ago MOHAMMAD • 0

votes

948

views

GO.db Annotation Clusterprofile GeneOntology

updated 3.3 years ago by Basti ▴ 780 • written 3.3 years ago by MOHAMMAD • 0

vote

replies

1.4k

views

topGO enrichmentanalysis geneontology

updated 3.4 years ago by Lluís Revilla Sancho ▴ 730 • written 3.4 years ago by Aini • 0

votes

replies

7.3k

views

clusterprofiler geneontology

updated 6.6 years ago by thokall ▴ 160 • written 6.6 years ago by giuseppe0525 • 0

votes

1000

views

geneontology R go semantic similarity

updated 7.5 years ago by Valerie Obenchain ★ 6.8k • written 7.5 years ago by manasa22.reddy • 0

10 results • Page 1 of 1

Recent ...

Replies

Comment: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0` by isaac.vock • 0

Thank you for looking into this and for your explanation! As a follow-up, would it be possible in future releases of featureCounts to pro…

Comment: error loading collectTRI regulon by silvaesilva.da • 0

Fantastic. Thank you very much. Everything has been sorted out

Answer: DESeq2 returns results for group with just one replicate by James W. MacDonald 66k

There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …

Answer: Limma model.matrix design with batch effect and different life stages proportion by Masongeorge • 0

Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.

Comment: error loading collectTRI regulon by deeenes ▴ 50

I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…

Votes

Answer: Odd behavior of Rsubread::featureCounts when setting `nonOverlap = 0`

Answer: DESeq2 returns results for group with just one replicate

Comment: error loading collectTRI regulon

A: Scaling option in fastMNN

Awards • All

Scholar to James W. MacDonald 66k