Bioconductor TopGO

Showing : topGO • reset

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618

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topGO

7 months ago • updated 6 months ago A. denDekker • 0

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855

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topGO

11 months ago Dan • 0

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994

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topGO enrichplot

updated 14 months ago by James W. MacDonald 67k • written 14 months ago by nromerov • 0

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743

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topGO scRNAseq

updated 17 months ago by Basti ▴ 780 • written 17 months ago by Francesco • 0

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788

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methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray

updated 19 months ago by belinda.phipson ▴ 40 • written 20 months ago by Grace • 0

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1.2k

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topGO

updated 20 months ago by James W. MacDonald 67k • written 20 months ago by NEELAM • 0

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627

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gene enrichment topGO GO retrieve

20 months ago Priya • 0

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1.6k

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topGO GO

24 months ago peter • 0

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topGO Ontology DifferentialExpression

2.2 years ago Kevin Gregory ▴ 10

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3.6k

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topGO

updated 2.4 years ago by Lluís Revilla Sancho ▴ 760 • written 2.5 years ago by Lucía ▴ 30

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Annotation GeneOntology topGO GO

updated 2.5 years ago by James W. MacDonald 67k • written 2.5 years ago by Raito92 ▴ 60

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2.7k

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clusterProfiler goseq topGO DESeq2

updated 2.6 years ago by James W. MacDonald 67k • written 2.6 years ago by Lucía ▴ 30

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746

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topGO GO

2.7 years ago theophile • 0

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1.8k

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topGO

updated 2.8 years ago by James W. MacDonald 67k • written 2.8 years ago by Noy • 0

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GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser

updated 2.9 years ago by Federico Marini ▴ 180 • written 2.9 years ago by chase.mateusiak • 0

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DESeq2 topGO heatmaps

updated 3.3 years ago by Guandong Shang ▴ 40 • written 3.3 years ago by anasjamshed1994 • 0

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topGO limma DEP

updated 3.4 years ago by James W. MacDonald 67k • written 3.4 years ago by pedarf • 0

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1.0k

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GenTable topGO

updated 3.8 years ago by James W. MacDonald 67k • written 3.8 years ago by dario.beraldi • 0

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760

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topGO weight01

3.8 years ago Vladimir • 0

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1.7k

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topGO enrichmentanalysis geneontology

updated 3.9 years ago by Lluís Revilla Sancho ▴ 760 • written 3.9 years ago by Aini • 0

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1.2k

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RNASeq GO topGO Pathways

3.9 years ago Ben ▴ 50

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2.1k

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topGO

updated 3.9 years ago by James W. MacDonald 67k • written 3.9 years ago by Amandine • 0

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2.2k

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GO hgu133plus2 topGO GO hgu133plus2 topGO

updated 3.9 years ago by Doc ▴ 20 • written 11.8 years ago by Kishor Tappita ▴ 340

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1.6k

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customannotation enrichmentanalysis topGO

updated 3.9 years ago by James W. MacDonald 67k • written 3.9 years ago by Aini • 0

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919

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DOSE hypeR goTools GOstats topGO

4.1 years ago Madza Farias-Virgens • 0

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3.2k

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foldchange topGO DifferentialExpression enrichment

updated 4.1 years ago by Gordon Smyth 52k • written 4.1 years ago by lessismore ▴ 20

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1.4k

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GO.db topGO

updated 4.1 years ago by James W. MacDonald 67k • written 4.1 years ago by fklirono • 0

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1.9k

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R TopGO Geneenrichment

updated 4.2 years ago by James W. MacDonald 67k • written 4.2 years ago by AP • 0

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topgo bug

7.9 years ago • updated 4.3 years ago Lluís Revilla Sancho ▴ 760

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1.6k

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topGO Gene Ontology enrichment panther.db

updated 4.3 years ago by Gordon Smyth 52k • written 4.3 years ago by Brian Smith ▴ 120

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1.4k

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software error topGO go

updated 4.3 years ago by Kevin Blighe ★ 4.0k • written 4.3 years ago by maria.ratto • 0

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1.2k

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topGO devtools R

updated 4.4 years ago by James W. MacDonald 67k • written 4.4 years ago by emisecherre • 0

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1.3k

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topGO microarray Gene ontology

updated 4.4 years ago by James W. MacDonald 67k • written 4.4 years ago by June. ▴ 10

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6.7k

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topGO topgo GO term analysis

updated 4.4 years ago by Kevin Blighe ★ 4.0k • written 4.4 years ago by ccha ▴ 10

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2.7k

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go software error topgo rna-seq

updated 22 months ago by James W. MacDonald 67k • written 4.6 years ago by morteza.aslanzadeh ▴ 30

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1.4k

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topGO

4.6 years ago abf ▴ 30

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833

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topGO

updated 4.6 years ago by James W. MacDonald 67k • written 4.6 years ago by vladimir.vinarsky • 0

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1.8k

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TopGO GO

4.7 years ago Al-a ▴ 10

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2.8k

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TOPGO annFUN error

updated 4.7 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by eleonora.porcu • 0

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topGo gene enrichment ontology analysis

5.4 years ago s.bourne • 0

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go topGO gene ontology enrichment

updated 5.5 years ago by James W. MacDonald 67k • written 5.5 years ago by t.bergmann • 0

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2.5k

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topGO software error

updated 5.5 years ago by James W. MacDonald 67k • written 5.5 years ago by Raito92 ▴ 60

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1.5k

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limma topGO microarray

updated 5.7 years ago by Gordon Smyth 52k • written 5.7 years ago by I.V. Lynn • 0

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1.2k

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topGO AnnotationForge

5.8 years ago psutton • 0

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1.3k

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topGO significant enrichment genes IDs

5.9 years ago David ROUX ▴ 20

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1.8k

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software error topGO org.hs.eg.db

6.0 years ago natske ▴ 10

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2.3k

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rnaseq topgo go enrichment

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by jgg • 0

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5.4k

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software error topgo

updated 6.1 years ago by James W. MacDonald 67k • written 6.1 years ago by fshodan • 0

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1.3k

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topGO

6.2 years ago Dave Th. • 0

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1.4k

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topgo

6.3 years ago anton.kratz ▴ 60

50 results • Page 1 of 1

Recent ...

Replies

Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k

limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…

Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k

Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…

Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60

Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…

Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k

For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0

Thanks for your reply!

Votes

C: edgeR and lack of counts ID on CPM matrix

A: DESeq2 Following RSEM

A: importing RSEM data into DESeq2

A: Expected counts from RSEM in DESeq2

A: Using RSEM reads for DESeq2

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