Bioconductor TopGO

Showing : topGO • reset

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768

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topGO

10 months ago A. denDekker • 0

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topGO

15 months ago Dan • 0

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1.2k

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topGO enrichplot

updated 18 months ago by James W. MacDonald 68k • written 18 months ago by nromerov • 0

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806

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topGO scRNAseq

updated 20 months ago by Basti ▴ 780 • written 20 months ago by Francesco • 0

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877

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methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray

updated 23 months ago by belinda.phipson ▴ 40 • written 23 months ago by Grace • 0

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topGO

updated 23 months ago by James W. MacDonald 68k • written 23 months ago by NEELAM • 0

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701

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gene enrichment topGO GO retrieve

24 months ago Priya • 0

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topGO GO

2.3 years ago peter • 0

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topGO Ontology DifferentialExpression

2.5 years ago Kevin Gregory ▴ 10

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4.1k

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topGO

updated 2.7 years ago by Lluís Revilla Sancho ▴ 760 • written 2.8 years ago by Lucía ▴ 30

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Annotation GeneOntology topGO GO

updated 2.8 years ago by James W. MacDonald 68k • written 2.8 years ago by Raito92 ▴ 60

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clusterProfiler goseq topGO DESeq2

updated 2.9 years ago by James W. MacDonald 68k • written 2.9 years ago by Lucía ▴ 30

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799

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topGO GO

3.0 years ago theophile • 0

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1.9k

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topGO

updated 3.1 years ago by James W. MacDonald 68k • written 3.1 years ago by Noy • 0

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GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser

updated 3.2 years ago by Federico Marini ▴ 180 • written 3.2 years ago by chase.mateusiak • 0

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DESeq2 topGO heatmaps

updated 3.6 years ago by Guandong Shang ▴ 40 • written 3.6 years ago by anasjamshed1994 • 0

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topGO limma DEP

updated 3.7 years ago by James W. MacDonald 68k • written 3.7 years ago by pedarf • 0

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GenTable topGO

updated 4.1 years ago by James W. MacDonald 68k • written 4.1 years ago by dario.beraldi • 0

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topGO weight01

4.1 years ago Vladimir • 0

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1.9k

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topGO enrichmentanalysis geneontology

updated 4.2 years ago by Lluís Revilla Sancho ▴ 760 • written 4.2 years ago by Aini • 0

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1.3k

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RNASeq GO topGO Pathways

4.2 years ago Ben ▴ 50

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2.4k

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topGO

updated 4.2 years ago by James W. MacDonald 68k • written 4.2 years ago by Amandine • 0

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2.3k

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GO hgu133plus2 topGO GO hgu133plus2 topGO

updated 4.2 years ago by Doc ▴ 20 • written 12.1 years ago by Kishor Tappita ▴ 340

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customannotation enrichmentanalysis topGO

updated 4.2 years ago by James W. MacDonald 68k • written 4.2 years ago by Aini • 0

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978

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DOSE hypeR goTools GOstats topGO

4.4 years ago Madza Farias-Virgens • 0

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foldchange topGO DifferentialExpression enrichment

updated 4.4 years ago by Gordon Smyth 52k • written 4.4 years ago by lessismore ▴ 20

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GO.db topGO

updated 4.4 years ago by James W. MacDonald 68k • written 4.4 years ago by fklirono • 0

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R TopGO Geneenrichment

updated 4.5 years ago by James W. MacDonald 68k • written 4.5 years ago by AP • 0

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2.1k

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topgo bug

8.2 years ago • updated 4.6 years ago Lluís Revilla Sancho ▴ 760

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1.8k

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topGO Gene Ontology enrichment panther.db

updated 4.6 years ago by Gordon Smyth 52k • written 4.6 years ago by Brian Smith ▴ 120

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software error topGO go

updated 4.6 years ago by Kevin Blighe ★ 4.0k • written 4.6 years ago by maria.ratto • 0

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1.3k

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topGO devtools R

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by emisecherre • 0

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topGO microarray Gene ontology

updated 4.7 years ago by James W. MacDonald 68k • written 4.7 years ago by June. ▴ 10

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7.1k

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topGO topgo GO term analysis

updated 4.7 years ago by Kevin Blighe ★ 4.0k • written 4.7 years ago by ccha ▴ 10

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3.0k

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go software error topgo rna-seq

updated 2.2 years ago by James W. MacDonald 68k • written 4.9 years ago by morteza.aslanzadeh ▴ 30

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1.5k

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topGO

4.9 years ago abf ▴ 30

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906

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topGO

updated 4.9 years ago by James W. MacDonald 68k • written 4.9 years ago by vladimir.vinarsky • 0

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1.9k

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TopGO GO

5.0 years ago Al-a ▴ 10

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3.1k

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TOPGO annFUN error

updated 5.0 years ago by Kevin Blighe ★ 4.0k • written 5.0 years ago by eleonora.porcu • 0

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topGo gene enrichment ontology analysis

5.7 years ago s.bourne • 0

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go topGO gene ontology enrichment

updated 5.8 years ago by James W. MacDonald 68k • written 5.8 years ago by t.bergmann • 0

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2.7k

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topGO software error

updated 5.8 years ago by James W. MacDonald 68k • written 5.8 years ago by Raito92 ▴ 60

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1.6k

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limma topGO microarray

updated 6.0 years ago by Gordon Smyth 52k • written 6.0 years ago by I.V. Lynn • 0

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1.3k

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topGO AnnotationForge

6.1 years ago psutton • 0

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1.4k

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topGO significant enrichment genes IDs

6.2 years ago David ROUX ▴ 20

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1.9k

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software error topGO org.hs.eg.db

6.3 years ago natske ▴ 10

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2.4k

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rnaseq topgo go enrichment

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by jgg • 0

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5.9k

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software error topgo

updated 6.4 years ago by James W. MacDonald 68k • written 6.4 years ago by fshodan • 0

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1.4k

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topGO

6.5 years ago Dave Th. • 0

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1.5k

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topgo

6.6 years ago anton.kratz ▴ 60

50 results • Page 1 of 1

Recent ...

Replies

Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR by skiaphrene ▴ 10

Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…

Comment: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k

What sort of object is `expression`? Does it contain any missing values?

Answer: Deleted:No significant MVPs with a BH adjusted P-value below 0.05 by shocked.tick.zyet • 0

Dealing with those adjusted p-values in ChAMP can feel like a frustrating game of [Uno Online](https://unoonlinefree.com) , especially when…

Comment: DESeq2 lfcShrink drastic shrinkage by Nick • 0

Did you ever figure out the cause of this? I am seeing very similar results and wondering if you have advice on how you may have resolved t…

Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0

Thanks for your time on this, I have also never seen anything quite like this before neither. The only confounding variable I received in t…

Votes

Modelling gene program dynamics across time with {lemur}

A: DESeq2 one group vs multiple groups comparison in presence of batch effect

Comment: BiocParallel_1.40.1.tar.gz not available

Limma outputs different results for same sample?

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