Showing : sgseq • reset
10
votes
11
replies
2.6k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 9 months ago by • 0 • written 7.6 years ago by ▴ 80
0
votes
0
replies
336
views
how to do Differential splicing from SGSeq analysis
DEXSeq SGSeq
10 months ago Sara • 0
1
vote
1
reply
464
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 10 months ago by • 0 • written 11 months ago by • 0
1
vote
0
replies
563
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag SplicedAlignment SGSeq minimap2
12 months ago jk ▴ 10
0
votes
0
replies
486
views
SGSeq how export PSI values for each typr of splice variant
SGSeq
16 months ago Alison • 0
2
votes
5
replies
1.6k
views
How should I handle read counts derived from SGSeq when they were passed to limma/edgeR
SGSeq limma edgeR
updated 6 months ago by • 0 • written 4.4 years ago by ▴ 10
6
votes
8
replies
3.6k
views
Issues with SGSeq: analyzeFeatures() returns errors on BAM files
sgseq
updated 5.2 years ago by ▴ 10 • written 8.6 years ago by ▴ 80
2
votes
1
reply
1.0k
views
Extract sample information from own BAM files using SGSeq
SGSeq
updated 5.3 years ago by ▴ 260 • written 5.3 years ago by ▴ 10
4
votes
4
replies
1.2k
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 7 months ago by • 0 • written 5.3 years ago by • 0
0
votes
2
replies
1.1k
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 5.4 years ago by ▴ 260 • written 5.4 years ago by • 0
0
votes
0
replies
1.0k
views
How to run my own data using SGSeq?
annotation sgseq
updated 6.1 years ago by 4.1k • written 6.1 years ago by • 0
0
votes
6
replies
1.9k
views
Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq alternative splicing SGSeq
6.4 years ago andrea.bast • 0
0
votes
1
reply
1.2k
views
SGFeatureCounts function in SGSeq package failed to generate splice graphs
sgseq
updated 7.4 years ago by ▴ 260 • written 7.4 years ago by • 0
2
votes
1
reply
1.9k
views
SGSeq error on getBamInfo
SGSeq getBamInfo RNASeq
updated 7.4 years ago by ▴ 260 • written 7.4 years ago by ▴ 40
4
votes
5
replies
1.9k
views
R session crash with SGSeq::convertToTxFeatures
crash SGSeq TxDb makeTxDbFromBiomart TxFeatures
updated 7.5 years ago by ▴ 260 • written 7.5 years ago by ▴ 40
3
votes
3
replies
1.8k
views
question about subsetting SGSeq results by different categories of splice events
sgseq
updated 7.7 years ago by ▴ 260 • written 7.7 years ago by ▴ 10
1
vote
5
replies
1.9k
views
Error when running getSGFeatureCounts
SGSeq software error
updated 8.1 years ago by ▴ 260 • written 8.1 years ago by ▴ 10
0
votes
15
replies
2.7k
views
Issues with SGSeq: analyzeVariants method returns an error...
sgseq analyzevariants
updated 8.3 years ago by ▴ 260 • written 8.4 years ago by ▴ 80
1
vote
15
replies
3.9k
views
Issues with SGSeq: plotFeatures method returns NULL
sgseq
updated 8.4 years ago by ▴ 260 • written 8.6 years ago by ▴ 80
5
votes
16
replies
3.2k
views
Read counts generated by SGSeq are always 0
sgseq splicing alternative splicing
updated 9.0 years ago by ▴ 260 • written 9.0 years ago by ▴ 20
2
votes
2
replies
1.8k
views
SGSeq: class of "sample_info" argument of analyzeFeatures, data.frame or DataFrame!
sgseq
updated 9.0 years ago by ▴ 260 • written 9.0 years ago by ▴ 40
1
vote
6
replies
2.2k
views
Error when predicting features with SGSeq
SGSeq
updated 9.6 years ago by ▴ 90 • written 9.6 years ago by ▴ 150
1
vote
6
replies
2.5k
views
SGSeq error on analyzeFeatures
SGSeq analyzeFeatures Splicing
10.2 years ago Paolo Guarnieri ▴ 20
23 results • Page 1 of 1
Recent ...
Replies
Comment: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by AB ▴ 110
Force=TRUE did the trick. Thank you.
Comment: www.stats.ox.ac.uk seems to be off, leading to errors/delays when installing pac by DENG • 0
[https://github.com/djunsheep/CRANextra/blob/main/README.md][1] add the following to the `.Rprofile` and `Rprofile.site` # fixing the…
Comment: Transcript ID Mismatch in riboWaltz Annotation Table by shepherl 4.1k
riboWalze is not a Bioconductor package and does not appear to be a Bioconductor function; the maintainer is not guaranteed to be on this …
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf by shepherl 4.1k
What is your `sessionInfo()`? I just tried locally and it works fine so there might have been a bad or interrupted download when initially…
Comment: error in ChAMP loading file by shocked.tick.zyet • 0
Great troubleshooting steps for ChAMP import issues! "ChAMP methylation data import errors" on [Google Search][1] for similar cases. Header…
Votes
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
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