Showing : sgseq • reset
10
votes
11
replies
2.3k
views
SGSeq: moving toward diffex from SGSeq analysis
sgseq rnaseq
updated 5 months ago by • 0 • written 7.2 years ago by ▴ 80
0
votes
0
replies
270
views
how to do Differential splicing from SGSeq analysis
DEXSeq SGSeq
6 months ago Sara • 0
1
vote
1
reply
332
views
The issue with SGSeq_analyzeFeatures() returns errors on BAM files
SGSeq
updated 6 months ago by • 0 • written 7 months ago by • 0
1
vote
0
replies
463
views
Could SGSeq utilizes "ts" tag produced from minimap2 other than "XS" tag?
XS-tag SplicedAlignment SGSeq minimap2
8 months ago jk ▴ 10
0
votes
0
replies
409
views
SGSeq how export PSI values for each typr of splice variant
SGSeq
12 months ago Alison • 0
2
votes
5
replies
1.5k
views
How should I handle read counts derived from SGSeq when they were passed to limma/edgeR
SGSeq limma edgeR
updated 9 weeks ago by • 0 • written 4.1 years ago by ▴ 10
6
votes
8
replies
3.5k
views
Issues with SGSeq: analyzeFeatures() returns errors on BAM files
sgseq
updated 4.9 years ago by ▴ 10 • written 8.3 years ago by ▴ 80
2
votes
1
reply
971
views
Extract sample information from own BAM files using SGSeq
SGSeq
updated 4.9 years ago by ▴ 260 • written 4.9 years ago by ▴ 10
4
votes
4
replies
1.1k
views
Custom gene annotations for SGSeq
sgseq alternative splicing rna seq
updated 3 months ago by • 0 • written 5.0 years ago by • 0
0
votes
2
replies
950
views
using only uniquely-mapping reads for alternative splicing using SGSeq
rna seq SGSeq Alternative splicing
updated 5.1 years ago by ▴ 260 • written 5.1 years ago by • 0
0
votes
0
replies
963
views
How to run my own data using SGSeq?
annotation sgseq
updated 5.8 years ago by 4.1k • written 5.8 years ago by • 0
0
votes
6
replies
1.7k
views
Which sequencing parameters are required for SGSeq analysis of splice events?
rna-seq alternative splicing SGSeq
6.0 years ago andrea.bast • 0
0
votes
1
reply
1.1k
views
SGFeatureCounts function in SGSeq package failed to generate splice graphs
sgseq
updated 7.0 years ago by ▴ 260 • written 7.0 years ago by • 0
2
votes
1
reply
1.8k
views
SGSeq error on getBamInfo
SGSeq getBamInfo RNASeq
updated 7.1 years ago by ▴ 260 • written 7.1 years ago by ▴ 40
4
votes
5
replies
1.8k
views
R session crash with SGSeq::convertToTxFeatures
crash SGSeq TxDb makeTxDbFromBiomart TxFeatures
updated 7.1 years ago by ▴ 260 • written 7.1 years ago by ▴ 40
3
votes
3
replies
1.7k
views
question about subsetting SGSeq results by different categories of splice events
sgseq
updated 7.4 years ago by ▴ 260 • written 7.4 years ago by ▴ 10
1
vote
5
replies
1.8k
views
Error when running getSGFeatureCounts
SGSeq software error
updated 7.8 years ago by ▴ 260 • written 7.8 years ago by ▴ 10
0
votes
15
replies
2.5k
views
Issues with SGSeq: analyzeVariants method returns an error...
sgseq analyzevariants
updated 7.9 years ago by ▴ 260 • written 8.1 years ago by ▴ 80
1
vote
15
replies
3.7k
views
Issues with SGSeq: plotFeatures method returns NULL
sgseq
updated 8.1 years ago by ▴ 260 • written 8.2 years ago by ▴ 80
5
votes
16
replies
3.0k
views
Read counts generated by SGSeq are always 0
sgseq splicing alternative splicing
updated 8.7 years ago by ▴ 260 • written 8.7 years ago by ▴ 20
2
votes
2
replies
1.7k
views
SGSeq: class of "sample_info" argument of analyzeFeatures, data.frame or DataFrame!
sgseq
updated 8.7 years ago by ▴ 260 • written 8.7 years ago by ▴ 40
1
vote
6
replies
2.1k
views
Error when predicting features with SGSeq
SGSeq
updated 9.3 years ago by ▴ 90 • written 9.3 years ago by ▴ 150
1
vote
6
replies
2.4k
views
SGSeq error on analyzeFeatures
SGSeq analyzeFeatures Splicing
9.9 years ago Paolo Guarnieri ▴ 20
23 results • Page 1 of 1
Recent ...
Replies
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
I just found this workaround: httr::set_config(config(ssl_verifypeer = FALSE, ssl_verifyhost = FALSE)) at [this Stack Overflow link][…
Comment: Problem at champ.load by icecreamlover • 0
Hello! Were you able to figure this out? I am running into the same error!
Comment: ChAMP - obtaining beta values using EPICv2 annotation by icecreamlover • 0
Hello, Were you able to fix the error? I used the same document and I am running into the same error. I am curious if you have any feedba…
Comment: BiomaRt Possible Ensembl SSL connectivity problems detected. by Adam • 0
Can this please be revisited and corrected ASAP? I'm encountering the same issue, using a slightly more modern version of R (4.1.0). It s…
Comment: Combining RNAseq and microarray data using edgeR/limma-voom by Adam Marstrand • 0
Thank you!
Votes
A: Up/Down Regulated GeneList from edgeR and R
A: Up/Down Regulated GeneList from edgeR and R
A: Down/Up-regulated genes asymmetry in edgeR differential expression analysis
Answer: Combining RNAseq and microarray data using edgeR/limma-voom
Answer: How do I merge a list of GRanges?
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