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News:
Bioconductor 3.19 is Released!
Release
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Software
10 months ago
shepherl
4.1k
5
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1
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1.5k
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News:
Bioconductor 3.18 is Released!
Packages
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written 16 months ago by
shepherl
4.1k
0
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0
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987
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News:
Bioconductor 3.17 is Released!
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22 months ago
shepherl
4.1k
0
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2
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849
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Bioconductor API or dataset
Bioconductor
Packages
Dataset
API
updated 2.1 years ago by
Marcel Ramos
700 • written 2.1 years ago by
dab0012
• 0
1
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0
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1.2k
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News:
Bioconductor 3.16 is Released!
Release
Packages
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Software
2.4 years ago
shepherl
4.1k
4
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News:
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Release
Devel
packages
release
devel
2.5 years ago
shepherl
4.1k
0
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1
reply
1.5k
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trouble installing DESeq2
install
packages
R
DESeq2
updated 2.8 years ago by
shepherl
4.1k • written 2.8 years ago by
eruan1
• 0
0
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2
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1.6k
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cannot install various functions in R
GRanges
packages
installation
updated 2.9 years ago by
shepherl
4.1k • written 2.9 years ago by
Eli
• 0
8
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0
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News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
2.9 years ago
shepherl
4.1k
1
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6
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3.6k
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Bioconductor installation problems
packages
installation
Bioconductor
updating
updated 3.0 years ago by
Marcel Ramos
700 • written 3.0 years ago by
jose
▴ 10
1
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0
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1.1k
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News:
Bioconductor Release 3.15 Schedule
Devel
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Release
devel
3.0 years ago
shepherl
4.1k
8
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0
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News:
Bioconductor 3.14 is Released!
release
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3.4 years ago
shepherl
4.1k
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News:
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devel
Devel
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Release
3.5 years ago
shepherl
4.1k
0
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0
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1.1k
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News:
knitr ERROR on Biocondcutor builders
Devel
Bioconductor
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BuildReport
devel
3.6 years ago
shepherl
4.1k
0
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1
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899
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Notification for package release?
packages
updated 3.8 years ago by
Lluís Revilla Sancho
▴ 760 • written 3.8 years ago by
curiousmind007
▴ 10
5
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0
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1.2k
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News:
Bioconductor 3.13 is Released!
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3.8 years ago
shepherl
4.1k
4
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News:
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4.4 years ago
shepherl
4.1k
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0
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News:
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News
4.5 years ago
shepherl
4.1k
3
votes
3
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1.7k
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Incomplete Install of Bioconductor Packages
Installation
Packages
Missing
updated 4.6 years ago by
Laurent Gatto
1.6k • written 4.9 years ago by
sreedta8
▴ 10
0
votes
3
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1.7k
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Cant update old packages
software error
packages
update
updated 4.7 years ago by
James W. MacDonald
68k • written 4.7 years ago by
bs14ab
• 0
0
votes
4
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2.7k
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Error: unexpected string constant in "suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE)), when installed the package "Mus.musculus"…
install
packages
Mus.musculus
updated 4.7 years ago by
Kevin Blighe
★ 4.0k • written 4.7 years ago by
443606623
• 0
1
vote
1
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1.1k
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Error when installing edgeR and DESeq package
software error
packages
updated 4.8 years ago by
James W. MacDonald
68k • written 4.8 years ago by
yassiflower
• 0
1
vote
5
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3.6k
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Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
bs14ab
• 0
4
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0
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1.0k
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News:
Bioconductor 3.11 is Released!
software
bioconductor
release
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News
4.9 years ago
shepherl
4.1k
3
votes
4
replies
1.9k
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Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
4.9 years ago
dakarai_esgdaille
▴ 10
1
vote
0
replies
1.0k
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News:
Bioconductor Release 3.11 Schedule Posted
release
deadlines
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News
5.0 years ago
shepherl
4.1k
0
votes
2
replies
1.5k
views
Unable to install package
packages
installation
GenomeGraphs
updated 5.1 years ago by
James W. MacDonald
68k • written 5.1 years ago by
alex
• 0
2
votes
2
replies
1.3k
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News:
Bioconductor Devel 3.11 Notification
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reports
News
5.3 years ago
shepherl
4.1k
6
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0
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1.1k
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News:
Bioconductor 3.10 is released!!
release
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News
5.4 years ago
shepherl
4.1k
0
votes
1
reply
1.3k
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 5.5 years ago by
Mike Smith
★ 6.6k • written 5.5 years ago by
kodherif
• 0
1
vote
4
replies
2.0k
views
Merging two files based on the identifier column (gene symbols)?
merge
files
R
packages
gene annotations
5.5 years ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
5.6k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
5.5 years ago
444579004
• 0
0
votes
1
reply
2.4k
views
R: oligo packages install error
oligo
packages
error
updated 5.7 years ago by
Martin Morgan
25k • written 5.7 years ago by
get3232
• 0
0
votes
1
reply
2.2k
views
Installation of r2excel package
github
packages
updated 6.1 years ago by
Gordon Smyth
52k • written 6.1 years ago by
thkapell
▴ 10
2
votes
1
reply
1.2k
views
Large Size of R packages containing S4 classes
S4
packages
updated 6.6 years ago by
Michael Lawrence
★ 11k • written 6.6 years ago by
lukaszbednarz
▴ 10
1
vote
1
reply
1.2k
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News:
DEADLINE: commits to Bioc 3.7
release
bioconductor
packages
package updates
News
6.9 years ago
shepherl
4.1k
0
votes
2
replies
2.3k
views
Issues installing packages miniconda environment
bioclite
deseq2
miniconda
packages
7.0 years ago
cpat
• 0
2
votes
2
replies
1.6k
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment
packages
granges
iranges
updated 7.2 years ago by
Aaron Lun
★ 28k • written 7.2 years ago by
rbronste
▴ 60
1
vote
2
replies
2.8k
views
Error : object path is not exported by namespace:Rsamtools
packages
installation problem
rsamtools
chippeakanno
ensembldb
7.2 years ago
inzirio
▴ 10
0
votes
1
reply
1.3k
views
News:
Single Package Builder Updates and Testing
packages
review
spb
News
7.3 years ago
shepherl
4.1k
0
votes
2
replies
1.5k
views
News:
Single Package Builder / New Package Submission
new submission
build report
packages
News
7.3 years ago
shepherl
4.1k
12
votes
5
replies
2.2k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
7.4 years ago
shepherl
4.1k
3
votes
3
replies
1.8k
views
Question regarding best bioconductor package for RNA-seq
rna-seq
packages
updated 8.0 years ago by
b.nota
▴ 370 • written 8.0 years ago by
Maximilian
▴ 10
3
votes
6
replies
2.5k
views
List of package names with versions
packages
updated 9.0 years ago by
Sushant Pawar
• 0 • written 9.0 years ago by
nathan.watsonhaigh
• 0
0
votes
0
replies
1.7k
views
News:
New Package Submission Deadline
Packages
News
9.0 years ago
Martin Morgan
25k
0
votes
4
replies
1.8k
views
Newbee question: how to output/write data (measureents) to a text file?
packages
9.2 years ago
Reinert Korsnes
• 0
2
votes
1
reply
3.2k
views
Installation of bioConductor packages
installation
packages
bioconductor
all
updated 9.3 years ago by
Martin Morgan
25k • written 9.3 years ago by
av
• 0
2
votes
4
replies
2.8k
views
Package RnBeads not available for R 3.1.2?
RnBeads
packages
R 3.1.2
9.7 years ago
bmreilly
• 0
1
vote
11
replies
2.5k
views
Bioconductor Software Packages raw (not html) detail view?
packages
details
10.1 years ago • updated 9.7 years ago
smoretti
▴ 10
0
votes
0
replies
1.8k
views
what R package prediction secondary structure for amino acids
packages
9.9 years ago
m016648
• 0
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Comment: Can't post a question?
by
DavideSant
• 0
Thank you, this was super useful!
Comment: Error in retrieving clinical data
by
silickas
• 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Comment: deseq2 lfc shrinkage with few DEGs
by
Robert
• 0
I'm dealing with a similar situation. I assume the coefficients related to batch effect would need to be included in idx also, is this corr…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Thank you so much!! Yeah I had thought about this too, regarding the fact that DiffBind is a wrapper for counting peaks in this way in R di…
Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling)
by
aitor
• 0
Hi everyone. I have a RIP-Seq analysis with 3 conditions and 3 assays (IP, IgG and Input for each of them). 4 replicates for each conditio…
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Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
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