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News: European Bioconductor Conference 2023 planning
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News: Join the Technical Advisory Board
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19 months ago Maria Doyle ▴ 90
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News: Final List of Deprecated Package Bioc 3.9
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News: Bioconductor joins GTN Smörgåsbord online training event, May 22-26, 2023!
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20 months ago Maria Doyle ▴ 90
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News: Registrations are now open for BioC Asia 2022
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2.2 years ago • updated 2.1 years ago Peter Hickey ▴ 740
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News: BioCAsia Virtual Meeting, 15-18 October 2020
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News: New Bioconductor Community Advisory Board Members for 2021
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3.7 years ago Matthew Ritchie ▴ 1000
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News: Join the Bioconductor Community Advisory Board
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News: Early career researchers: nominate to present your work at BVCN virtual conference on microbiome research
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3.9 years ago Matthew Ritchie ▴ 1000
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News: Community engagement and outreach award
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News: SUPPORT SITE UPGRADE TODAY -- PLEASE REFRAIN FROM POSTING
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4.2 years ago shepherl 4.1k
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DESeq2 multiple groups comparison issues, incorrect log2FC results in a small proportion of genes
deseq2
updated 4.1 years ago by 43k • written 4.2 years ago by • 0
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News: Final List of Deprecated Packages for Bioc3.12
annotation software experimentdata deprecated News
4.2 years ago shepherl 4.1k
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News: BridgeDbR devel package upgraded to BridgeDb 3
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4.2 years ago egon.willighagen ▴ 10
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News: Bioconductor 3.12 db0s, OrgDbs and TxDbs now available
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4.2 years ago kayla.interdonato ▴ 160
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News: Project-wide Code of Conduct statement for Bioconductor
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4.2 years ago Laurent Gatto 1.6k
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News: List of Deprecated Packages for Bioc3.12
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4.3 years ago • updated 4.2 years ago shepherl 4.1k
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News: New Package Submission Deadline for Bioc Release 3.12
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4.2 years ago shepherl 4.1k
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News: Bioconductor Release 3.12 Schedule Posted
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4.3 years ago shepherl 4.1k
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News: ensembldb EnsDb databases for Ensembl release 101 added to AnnotationHub
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4.3 years ago Johannes Rainer ★ 2.1k
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News: Ensembl 101 hase been released
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4.3 years ago mchakiachvili ▴ 20
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News: James Taylor foundation: scholarships to Biological Data Science 2020 at CSHL
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4.4 years ago Kasper Daniel Hansen ★ 6.5k
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News: New Package Submission Workflow Updates!
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News: Bioc2020 - Call for BOF/HAK/FAQ Sections
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4.7 years ago • updated 4.5 years ago shepherl 4.1k
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News: Bioc2020 - Call for BOF/HAK/FAQ Sections Still Open
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4.5 years ago shepherl 4.1k
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News: Award Nomination Deadline Monday June 15th!
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4.5 years ago shepherl 4.1k
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News: Scientific or Informatic Technology Advancement Award!
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4.5 years ago shepherl 4.1k
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News: Long-term contribution award
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4.5 years ago shepherl 4.1k
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News: Documentation Bioconductor Award
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4.5 years ago shepherl 4.1k
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News: List of Deprecated Packages for Bioc3.12
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4.5 years ago shepherl 4.1k
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News: New Package Bioconductor Award
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4.5 years ago shepherl 4.1k
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900
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News: Support Site Bioconductor Award
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4.5 years ago shepherl 4.1k
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News: Bioc2020 - Virtual Conference Registration
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4.6 years ago shepherl 4.1k
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885
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News: Updated annotation packages
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4.6 years ago kayla.interdonato ▴ 160
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News: Nominations for Bioconductor Awards!
Bioc2020 Bioconductor Awards Recognition News
4.7 years ago • updated 4.6 years ago shepherl 4.1k
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News: Single Package Builder / New Package Submission
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4.6 years ago shepherl 4.1k
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News: Bioconductor Technical Advisory Board Nominees, 2020
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written 4.6 years ago by 25k
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900
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News: Public Calendar of Events
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4.6 years ago shepherl 4.1k
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News: ensembldb EnsDb databases for Ensembl release 100 added to AnnotationHub
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4.6 years ago Johannes Rainer ★ 2.1k
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News: Issues with annotation packages
annotation news release News
4.6 years ago kayla.interdonato ▴ 160
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News: Final List of Deprecated Packages for Bioc3.11
software annotation experiment data deprecated News
updated 4.6 years ago by ▴ 160 • written 4.7 years ago by 4.1k
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News: Bioconductor 3.11 OrgDb and TxDb packages now available
annotation news release News
4.6 years ago kayla.interdonato ▴ 160
1
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942
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News: Ensembl 100 has been released
biomart ensembl e100 mart news News
4.6 years ago Thomas Maurel ▴ 800
4
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961
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News: Bioconductor 3.11 is Released!
software bioconductor release packages News
4.6 years ago shepherl 4.1k
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4
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News: BridgeDb build fails due to website unavailability
bridgedbr News
5.0 years ago • updated 4.7 years ago egon.willighagen ▴ 10
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1.1k
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News: Import Deadlines for RELEASE 3.11
release devel deadline bioconductor News
4.7 years ago shepherl 4.1k
10
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2.9k
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News: Professor James Taylor
in memoriam News
4.7 years ago Martin Morgan 25k
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News: Last Day to Submit New Packages for Bioconductor Release 3.11
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4.7 years ago shepherl 4.1k
2
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News: Bioconductor Community Advisory Board Members
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4.7 years ago Matthew Ritchie ▴ 1000
0
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1
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1.3k
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News: New Package and New Docker Image Submission Deadline for Bioc Release 3.11
release package submission docker deadline News
4.8 years ago • updated 4.7 years ago shepherl 4.1k
50 results • Page 1 of 1
Recent ...
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Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
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C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
A: Using RSEM reads for DESeq2
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