Showing : msa • reset
0
votes
2
replies
1.8k
views
Error in msaFun Cannot open input file. No alignment!
msa
written 9 months ago by ▴ 30
0
votes
1
reply
623
views
Cant post a bug report
msa
updated 11 months ago by ▴ 50 • written 16 months ago by • 0
0
votes
0
replies
469
views
msa package Error in .local(x, ...) : consensus matrix 'x' is not in proper format
msa
18 months ago Yang • 0
0
votes
2
replies
816
views
msa Installation failed - please help
Install msa
19 months ago Ido • 0
1
vote
7
replies
3.8k
views
MSA package fails to be installed - installation of package ‘msa’ had non-zero exit status
msa MultipleSequenceAlignment
updated 21 months ago by • 0 • written 3.8 years ago by • 0
0
votes
0
replies
497
views
msa module crash
msa
23 months ago systems • 0
0
votes
0
replies
720
views
adding peptides to a multiple sequence alignment
msa IRanges Biostrings
24 months ago Mario Dejung • 0
0
votes
7
replies
3.6k
views
msa: object 'msaClustalW' of mode 'function' was not found
msa
updated 2.1 years ago by ▴ 300 • written 4.4 years ago by • 0
0
votes
1
reply
1.0k
views
Error installing package msa on macOS Monterey 12.6 arm64
msa arm64
2.2 years ago lisa.a.ouellette • 0
0
votes
0
replies
931
views
Edit alignment in msa
alig msa Alignment
2.2 years ago Luis • 0
0
votes
1
reply
1.4k
views
Difficulty with msaConvert function in R package
ape msa
updated 2.7 years ago by ▴ 300 • written 3.1 years ago by • 0
1
vote
1
reply
1.7k
views
Msa package clustal-omega
msa
updated 3.1 years ago by ▴ 180 • written 3.1 years ago by • 0
0
votes
0
replies
791
views
Can I quantify the number of mismatches post alignment?
msa
3.1 years ago Field -Ye • 0
8
votes
8
replies
3.1k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error msa
updated 3.2 years ago by ▴ 300 • written 4.5 years ago by ▴ 40
0
votes
1
reply
1.4k
views
msaprettyprint
msa prettyprint
updated 3.6 years ago by ▴ 300 • written 3.6 years ago by • 0
2
votes
3
replies
3.2k
views
msaprettyprint error in R
msa
updated 4.1 years ago by ▴ 300 • written 4.4 years ago by • 0
0
votes
0
replies
666
views
[Function Request]converts a AA-based fasta alignment (that includes aa fasta sequences of different strains) into a vcf file
msa
4.2 years ago yeli7068 • 0
0
votes
3
replies
2.1k
views
DECIPHER save alignement in outputs
msa decipher output prettyPrint
updated 4.3 years ago by ▴ 300 • written 4.3 years ago by • 0
0
votes
0
replies
945
views
msa: cannot load library silently
msa
4.3 years ago richel • 0
0
votes
3
replies
1.6k
views
Align a list of DNA sequence, extract only positions with SNPs for conpact view?
msa Biostrings
updated 4.7 years ago by ▴ 300 • written 4.7 years ago by ▴ 80
1
vote
1
reply
1.5k
views
Error using r msa::msaClustalW in parallel
software error msa
updated 4.9 years ago by ▴ 300 • written 4.9 years ago by ▴ 10
0
votes
1
reply
2.8k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect msa bios2mds BiocManager Bioconductor
5.6 years ago morlenrp • 0
0
votes
1
reply
1.3k
views
Can any of the existing `MSA` packages be used/adapted to visualize a pre-aligned fasta or tsv file (e.g., `kalign` output)?
msa phylogeny
updated 5.7 years ago by ▴ 20 • written 5.7 years ago by • 0
1
vote
2
replies
1.3k
views
What is the '?' in the result of R package 'msa' function 'msa'?
MSA R Multiple sequence alignment consensus sequence
updated 5.7 years ago by ▴ 20 • written 5.7 years ago by • 0
0
votes
9
replies
2.3k
views
visualizing alignment without realignment
msa alignment visualization
updated 5.9 years ago by 25k • written 5.9 years ago by • 0
1
vote
2
replies
1.5k
views
Package for custom visualization of multiple sequence alignment
MSA visualization
updated 6.2 years ago by ▴ 20 • written 6.2 years ago by • 0
0
votes
4
replies
1.5k
views
Error: could not find function "msaConvert"
msa
updated 6.5 years ago by ▴ 300 • written 6.5 years ago by • 0
0
votes
1
reply
1.0k
views
Defining populations in a msaClustalOmega alignment
msa
6.6 years ago cav3gh • 0
2
votes
2
replies
4.1k
views
How to get msa output in fasta format
msa msaprettyprint()
updated 6.7 years ago by ▴ 300 • written 6.7 years ago by • 0
2
votes
2
replies
1.3k
views
seqfault wiht msa
msa segfault
6.7 years ago jmh5ad ▴ 40
0
votes
1
reply
1.7k
views
Status 1 error when using msaPrettyPrint() to make pdfs with MsaAAMultipleAlignment
msaprettyprint() latex pdf msa
updated 7.0 years ago by ▴ 300 • written 7.0 years ago by • 0
0
votes
1
reply
1.6k
views
Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
msa iranges
updated 7.0 years ago by ▴ 300 • written 7.0 years ago by • 0
2
votes
11
replies
6.2k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint() msa multiplealignment export
updated 7.0 years ago by ▴ 300 • written 7.0 years ago by ★ 1.5k
2
votes
4
replies
2.4k
views
running msa (msa) aborts R session
msa alignment r software error
written 7.1 years ago by • 0
3
votes
2
replies
2.2k
views
Installation of MSA package fails
MSA package installation software error compilation error
updated 7.1 years ago by ▴ 300 • written 7.1 years ago by ▴ 10
2
votes
2
replies
2.9k
views
msa: How to obtain a subset of an alignment
msa Biostrings MultipleAlignment
updated 7.3 years ago by ▴ 300 • written 7.3 years ago by ▴ 10
4
votes
5
replies
2.0k
views
Can't install msa on FreeBSD
software error FreeBSD msa
7.4 years ago spcohen2 ▴ 20
1
vote
2
replies
1.5k
views
untranslate AAstringset {Biostrings} or MsaAAMultipleAlignment {msa}
biostrings msa
7.4 years ago multipleseqs • 0
8
votes
14
replies
12k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa msaprettyprint() fasta
updated 7.6 years ago by • 0 • written 8.0 years ago by ▴ 50
2
votes
5
replies
2.1k
views
Multiple Sequence Alignment using DNA sequence
msa decipher
7.6 years ago bbista91 ▴ 10
2
votes
2
replies
2.2k
views
Error with MSA package - could not find symbol "recursive"
msa
updated 7.8 years ago by 25k • written 7.8 years ago by ▴ 10
2
votes
1
reply
1.6k
views
Outputting a multiple alignment to file error: could not find function write.XStringSet
msa
updated 7.9 years ago by ▴ 300 • written 7.9 years ago by ▴ 10
1
vote
2
replies
1.5k
views
msaPrettyPrint cannot handle long sequences?
msa msaprettyprint() multiple sequence alignment
7.9 years ago map2085 ▴ 40
9
votes
14
replies
3.9k
views
msa package installation problem
msa
updated 7.9 years ago by ▴ 10 • written 8.0 years ago by ▴ 120
2
votes
9
replies
3.8k
views
msa alignement: sorted sequences by sequence name
msa alignement output sorted
7.9 years ago Olorin ▴ 50
1
vote
1
reply
5.2k
views
Using msa msaPrettyPrint(): issues with latex
msa latex msaPrettyPrint()
8.0 years ago Olorin ▴ 50
0
votes
0
replies
1.4k
views
Using readAAMultipleAlignment to parse CMFinder Stockholm format alignments
biostrings stockholm msa cmfinder
8.0 years ago Keith Hughitt ▴ 180
0
votes
1
reply
1.2k
views
How to draw phylogeny tree for long genomes? ('msa' taking much time)
msa phylogenetic
updated 8.1 years ago by ▴ 300 • written 8.1 years ago by ▴ 50
0
votes
1
reply
1.9k
views
Error: could not find function "msaConvert"
msa software error
updated 8.2 years ago by ▴ 300 • written 8.2 years ago by • 0
0
votes
3
replies
1.8k
views
installation failed when trying msa
msa
updated 8.3 years ago by ▴ 300 • written 8.3 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Gordon Smyth 52k
Sorry, I had forgotten estimateGLMDisp() produces weights as well as NB dispersions. The weights from estimatGLMRobustDisp() were intended …
Answer: Mean variance curve troubleshoot filtering by Gordon Smyth 52k
You could use `filterByExpr()`, as recommended by Law et al (2018) and in the limma and edgeR case studies. However, the main problem wi…
Comment: How do I fix an odd voom plot in a combined dataset? by Gordon Smyth 52k
The fact that you have partial NA coefficients indicates that your merged dataset consists in good part of NAs for a very large number of g…
Comment: How do I fix an odd voom plot in a combined dataset? by 1sunmic2 • 0
Thanks for responding! I did change the code slightly: dge1 <- DGEList(counts = combined_data_counts) keep <- rowSums(cpm(dge1)…
Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis by Andre • 0
The estimateGLMRobustDisp() function seems to have an effect on glmQLFit(), even in edgeR 4 (4.4.1). If I use estimateGLMRobustDisp(), like…
Votes
Answer: How do I fix an odd voom plot in a combined dataset?
Answer: How do I fix an odd voom plot in a combined dataset?
Comment: How do I fix an odd voom plot in a combined dataset?
C: How does edgeR cpm function calculate log(CPM) values?
C: How does edgeR cpm function calculate log(CPM) values?
Awards • All
Popular Question to Ken C • 0
Popular Question to gingergeiger22 • 0
Popular Question to Gordon Smyth 52k
Popular Question to James W. MacDonald 67k
Popular Question to Chris ▴ 20
Locations • All
The Netherlands, 15 minutes ago
WEHI, Melbourne, Australia, 27 minutes ago
University of Cambridge, UK | NIH Bethesda, MD, 4 hours ago
United States, 5 hours ago
Canada, 5 hours ago
Traffic: 613 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6