Showing : methylationarraydata • reset
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
3 days ago charlie.wright • 0
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2
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238
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
6 days ago a.alkema • 0
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1
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137
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 18 days ago by 68k • written 19 days ago by • 0
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1
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367
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 5 months ago by 68k • written 5 months ago by ▴ 10
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443
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
11 months ago • updated 10 months ago Giovanni Calice ▴ 160
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Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
14 months ago kyj2226 • 0
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6
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1.2k
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
15 months ago aldea85 • 0
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3
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952
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 17 months ago by 68k • written 18 months ago by • 0
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809
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
18 months ago Arianna • 0
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1.1k
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
20 months ago Irene • 0
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1
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820
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 21 months ago by ▴ 40 • written 21 months ago by • 0
2
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6
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1.5k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 21 months ago by ▴ 200 • written 21 months ago by • 0
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801
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 22 months ago by 52k • written 22 months ago by • 0
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4
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1.5k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 23 months ago by 68k • written 23 months ago by • 0
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5
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1.8k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 23 months ago by • 0
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2
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2.1k
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ChAMP package:Error in cmdscale(d) : 'k' must be in {1, 2, .. n - 1}
MethylationArrayData
2.3 years ago shuangshuang • 0
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2
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1.6k
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Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
2.8 years ago fluentin44 • 0
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943
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.9 years ago Jitendra ▴ 10
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1.1k
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Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.2 years ago Paulina • 0
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1.0k
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DNA methylation EPIC array and ChromHMM
chromhmmData MethylationArrayData
3.5 years ago macsue.jacques ▴ 10
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1.0k
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minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
3.5 years ago ponche_de_kiwi • 0
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6
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4.1k
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Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.6 years ago FWNL15 • 0
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1
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1.1k
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Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 3.7 years ago by ▴ 780 • written 3.7 years ago by • 0
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1.3k
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How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
3.9 years ago D ▴ 10
1
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4
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3.4k
views
Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData methy Bioconductor minfi
4.0 years ago shweta • 0
1
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1
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2.8k
views
DMR Plot
dmr MethylationArrayData DMRcatedata
updated 4.3 years ago by 68k • written 4.3 years ago by • 0
26 results • Page 1 of 1
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Comment: WGCNA coupled with differential expression analysis: question about baseline mod by hetaf16210 • 0
@[slope][1] If feasible, consider conducting both analyses. Start with a pooled analysis to identify broad patterns, then conduct separate …
Comment: DESeq2 adujsted p-value cutoff seemingly not working by 980linnet • 0
Stuck on DESeq2 with alpha=.05 for padj cutoff. Can't seem to get the differential expression analysis to stick the landing - it's like try…
Comment: internal error in trio library when trying to use lfmm() in LEA package by PW • 0
>ERROR: unable to open file D://anole_geno.snmf/K1/run1/anole_geno_r1.1.Q. Please, check that the name of the file you provided is correct.…
Comment: DESeq2 adujsted p-value cutoff seemingly not working by Guilherme • 0
Thank you for your answer So the proper way to conduct the analysis is to put the filters in the results() function and later filter the da…
Comment: DiffBind - observation that the default union overlap is actually a gap of 1 bp by Ian D. ▴ 70
Please can you comment on this @rory.
Votes
A: how to extract Granges not overlapping with other ganges?
DESeq2 1.20.0 lfcshrink function
A: LIMMA on RT-PCR data
Answer: Efficiently working with HDF5-backed SingleCellExperiments
Efficiently working with HDF5-backed SingleCellExperiments
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