Showing : GeneExpression • reset
4
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9
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209
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Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2 timecoursedata GeneExpression
updated 13 hours ago by ★ 4.1k • written 1 day ago by • 0
2
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3
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471
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"could not find function "readTSGE" in package ctsGE" Error occurs when trying to follow ctsGE package instructions.
GeneExpression Clustering ctsGE
11 weeks ago jbgnielson • 0
2
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2
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435
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
5 months ago Manthos • 0
2
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3
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1.7k
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TPM from STAR mapped counts
GeneExpression GenomicFeatures RNA-Seq TPM
updated 8 months ago by 50k • written 8 months ago by • 0
0
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1
reply
493
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
9 months ago Arianna • 0
0
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2
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1.8k
views
FeatureCounts Output Counts at Exon Level Using Default Settings, want gene level
GeneExpression
13 months ago CDSPARKS ▴ 10
0
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1
reply
640
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 14 months ago by ★ 4.1k • written 14 months ago by • 0
0
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1
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2.5k
views
DESeq2 after Seurat analysis on integrated datasets
DESeq2 SingleCell GeneExpression Seurat
updated 15 months ago by ★ 4.1k • written 15 months ago by • 0
2
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4
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1.7k
views
Comparing different method for DESEQ2
DESeq2 GeneExpression
updated 19 months ago by 42k • written 20 months ago by • 0
0
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3
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1.0k
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CountOverlap
GeneExpression ChIPSeqData
updated 19 months ago by 65k • written 19 months ago by ▴ 20
0
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0
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447
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Free Gibbson energy RNA doublex
GeneExpression RNAinteract
21 months ago Tamina • 0
1
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0
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585
views
Error while running Case study n. 3: Integration of methylation and expression for ACC
geneexpression methylation
22 months ago hlee ▴ 10
0
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2
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941
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 22 months ago by ★ 1.4k • written 22 months ago by • 0
0
votes
1
reply
542
views
Error "DESeqDataSetFromMatrix" function not found
GeneExpression
updated 22 months ago by ▴ 780 • written 22 months ago by • 0
0
votes
1
reply
642
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Aggregate differentially expressed genes across all contrast results using DEVis
DifferentialExpression NanoporeRNASeq DESeq2 GeneExpression DEVis
updated 23 months ago by 65k • written 23 months ago by • 0
1
vote
1
reply
785
views
Error while using champ.SVD function
GeneExpression
updated 2.1 years ago by ▴ 780 • written 2.1 years ago by • 0
0
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1
reply
1.9k
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GDCprepare of STAR - counts
GeneExpression TCGAbiolinks
updated 20 months ago by • 0 • written 2.1 years ago by • 0
0
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0
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856
views
Volcano plot: Putting calculated values in legend
GeneExpression
updated 2.1 years ago by ★ 3.9k • written 2.1 years ago by • 0
2
votes
2
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828
views
Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 2.1 years ago by • 0 • written 2.2 years ago by ▴ 10
0
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2
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2.0k
views
Using DESeq2 for Differential Expression Analysis with Interaction Term
DifferentialExpression GeneExpression DESeq2 Design()
2.6 years ago p.l.chen • 0
2
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2
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6.8k
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Deseq2 and log2foldchange cutoffs- How to get differentially expressed genes?
DifferentialExpression GeneExpression DESeq2 R
updated 2.6 years ago by ★ 4.1k • written 2.6 years ago by ▴ 10
0
votes
2
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979
views
Gene expression in R
limma edgeR Biobase GeneExpression
2.7 years ago sogol.bouyeh • 0
2
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2
replies
1.7k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
2.9 years ago SUMIT • 0
5
votes
18
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2.9k
views
DESeq2 comparison two cell types and two genotypes
GeneExpressionWorkflow DESeq2 GeneExpression
updated 3.0 years ago by 42k • written 3.1 years ago by • 0
1
vote
3
replies
984
views
DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 3.3 years ago by 42k • written 3.3 years ago by • 0
1
vote
1
reply
736
views
Accounting for fish body mass in DE?
GeneExpression edgeR
updated 3.4 years ago by 65k • written 3.4 years ago by • 0
0
votes
1
reply
754
views
Find significant genes related to a specific disease
GeneExpression RNASeqR limma
updated 3.4 years ago by ▴ 510 • written 3.4 years ago by • 0
1
vote
3
replies
970
views
Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression R limma MultipleComparison
updated 3.4 years ago by 65k • written 3.4 years ago by • 0
0
votes
0
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626
views
Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
3.5 years ago coobzie • 0
2
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5
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11k
views
Calculating FPKM from raw counts data using fpkm() in deseq2
deseq2 r fpkm() geneexpression
updated 5.6 years ago by 42k • written 5.6 years ago by ▴ 60
1
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4
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2.0k
views
Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress geoquery geneexpression
updated 6.1 years ago by 21k • written 6.1 years ago by ▴ 10
3
votes
1
reply
1.7k
views
Processing several GSM from GEO database using Barcode and fRMA
frma barcode geneexpression gsm ncbi geo
updated 6.5 years ago by ▴ 830 • written 6.5 years ago by • 0
1
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4
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1.8k
views
ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 6.8 years ago by ▴ 120 • written 6.8 years ago by ▴ 60
1
vote
3
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1.2k
views
General suggestions regarding gene expression
geneexpression
updated 7.2 years ago by 50k • written 7.2 years ago by • 0
0
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0
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921
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Where or how to find the gene interaction with itself?
microarray gene interaction geneexpression
7.4 years ago shaheryar • 0
0
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0
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1.2k
views
Error in SAMseq analysis with R
r samseq microarray rnaseq geneexpression
7.7 years ago namilio • 0
0
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0
replies
1.2k
views
Methylation and gene expression
methylation geneexpression
7.8 years ago Asma rabe ▴ 290
0
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2
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1.1k
views
Methylation and gene expression data
methylation geneexpression
updated 8.0 years ago by ▴ 130 • written 8.0 years ago by ▴ 290
0
votes
3
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1.6k
views
error in drawing MDS plot for eset
MDSplot geneexpression insilicomerging
updated 8.2 years ago by 65k • written 8.2 years ago by ▴ 20
1
vote
6
replies
1.8k
views
how to deal the effect of enormous gene expression?
deseq2 rnaseq tomato geneexpression
updated 8.2 years ago by 42k • written 8.2 years ago by • 0
0
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1
reply
1.3k
views
Error in MetaQC R package.
r metaqc microarray geneexpression
8.4 years ago Agaz Hussain Wani ▴ 260
0
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3
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1.8k
views
problem with WGCNA
geneexpression
updated 8.5 years ago by ★ 3.0k • written 8.5 years ago by • 0
2
votes
5
replies
1.7k
views
heatmap in R
r language microarray geneexpression
updated 8.7 years ago by ★ 1.0k • written 8.7 years ago by • 0
1
vote
1
reply
1.2k
views
gene expression data analysis
microarray geneexpression
updated 8.7 years ago by 65k • written 8.7 years ago by • 0
1
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1
reply
5.1k
views
NA p and p adjusted value
geneexpression
updated 8.8 years ago by ★ 3.0k • written 8.8 years ago by • 0
1
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2
replies
5.7k
views
explanation of makeContrasts function of limma package
limma microarray R geneexpression
updated 8.8 years ago by ★ 28k • written 8.8 years ago by ▴ 10
0
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3
replies
11k
views
How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 8.8 years ago by ▴ 830 • written 8.8 years ago by ▴ 10
0
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0
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1.1k
views
Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
9.4 years ago Peter.Wood • 0
3
votes
5
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8.6k
views
limma voom accessing normalised counts tables
limma rnaseq geneexpression voom counts
updated 9.5 years ago by ★ 13k • written 9.5 years ago by ▴ 10
9
votes
7
replies
9.3k
views
DESeq2 timecourse - How to set the experimental design
deseq2 geneexpression timecourse
updated 9.6 years ago by ★ 13k • written 9.6 years ago by ▴ 10
50 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
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Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
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So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
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Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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