Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
customProDB
•
reset
0
votes
1
reply
663
views
customProDB easyrun error in generating a custom protein database: Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse")
customProDB
17 months ago
Esraa
• 0
0
votes
1
reply
652
views
Calculate RPKMs and Output proteins pass the cutoff into FASTA file ... Error in keepSeqlevels(anno, seqlevels(galn), pruning.mode = "coarse") : i…
customProDB
easyrun
error
mm10
Mus_musculus_Data
updated 18 months ago by
James W. MacDonald
67k • written 18 months ago by
Esraa
• 0
0
votes
0
replies
399
views
customProDB: error aberrant fasta from SNV
customProDB
21 months ago
finoa.li
• 0
0
votes
0
replies
594
views
CustomProDB: specify a snp dataset to be used for the SNP annotation
customProDB
2.3 years ago
04.marshal-decibel
• 0
0
votes
0
replies
963
views
How to get the chrominfo from ENSEMBL? (biomaRt and customProDB)
biomaRt
customProDB
2.4 years ago
04.marshal-decibel
• 0
0
votes
1
reply
896
views
customProDB: function PrepareAnnotationEnsembl() not working (biomart issue?)
customProDB
Ensembl connection
biomart
5.0 years ago
laura.fancello
• 0
0
votes
1
reply
1.0k
views
CustomProDB InputVcf() - Issue getting the GRanges INDEL object from VCF file
vcf
snv
gatk
customprodb
inputvcf
5.4 years ago
Elena.M
• 0
4
votes
9
replies
3.7k
views
Create protein sequences including variants from a VCF file
VariantAnnotation
customProDB
updated 6 months ago by
Yun
• 0 • written 5.7 years ago by
daniel.magnus.bader
▴ 50
0
votes
1
reply
1.1k
views
customProDB: "complex" SNV scenarios handling
customprodb
updated 6.2 years ago by
xiaojing.wang
▴ 50 • written 6.2 years ago by
iranmdl15
• 0
0
votes
1
reply
1.1k
views
Error with PrepareAnnotationRefseq: "tablenametotrack2: UCSC table "refGene" is not supported"
customProDB
updated 6.3 years ago by
xiaojing.wang
▴ 50 • written 6.4 years ago by
samupatt
• 0
0
votes
1
reply
1.1k
views
aaVariation function bug (Methonine instead of Leucine)
customprodb
translation
updated 6.3 years ago by
xiaojing.wang
▴ 50 • written 6.6 years ago by
georges.bedran
• 0
0
votes
3
replies
1.9k
views
calculateRPKM error in customProDB
software error
customprodb
updated 3.0 years ago by
Anne
• 0 • written 7.3 years ago by
javamng
▴ 10
0
votes
0
replies
1.1k
views
Annotation package generation error for customprodb for hg38
customprodb
6.8 years ago
arunima2
• 0
1
vote
1
reply
1.6k
views
error with calculateRPKM in customProDB
customProDB
software error
updated 3.0 years ago by
Anne
• 0 • written 7.3 years ago by
javamng
▴ 10
0
votes
1
reply
1.2k
views
customProDB, OutputVarproseq function update (snvproseq)
customprodb
updated 7.9 years ago by
xiaojing.wang
▴ 50 • written 7.9 years ago by
georges.bedran
• 0
0
votes
0
replies
1.3k
views
PrepareAnnotationRefseq2 function error!
PGA
customprodb
8.3 years ago
yeh234
• 0
0
votes
1
reply
1.2k
views
CustomproDB JunctionType function
customprodb
updated 8.4 years ago by
xiaojing.wang
▴ 50 • written 8.4 years ago by
georges.bedran
• 0
0
votes
1
reply
1.2k
views
Pull request for customProDB package
customProDB
featurerequest
updated 8.5 years ago by
Dan Tenenbaum
★ 8.2k • written 8.5 years ago by
matt.chambers42
▴ 10
2
votes
4
replies
2.1k
views
customProDB: error aberrant fasta from indels
indel
customprodb
fasta
variantannotation
updated 9.4 years ago by
xiaojing.wang
▴ 50 • written 9.4 years ago by
kristenbeck527
• 0
2
votes
2
replies
1.8k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb
dbsnp
refseq
varianttools
updated 9.4 years ago by
xiaojing.wang
▴ 50 • written 9.4 years ago by
kristenbeck527
• 0
2
votes
4
replies
1.9k
views
customProDB: issues getting dbSNP data for non-model organism
ensembl
macaque
dbsnp
customprodb
updated 9.4 years ago by
xiaojing.wang
▴ 50 • written 9.4 years ago by
kristenbeck527
• 0
21 results • Page
1 of 1
Recent ...
Replies
Comment: Appropriate ways to filter counts data for voom/limma
by
dorothylminter
• 0
The proper way to filter count data for voom/limma emphasizes the importance of choosing the right filtering technique to enhance detection…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
Robert Castelo
★ 3.4k
Hi, this is a long comment thread on 4-year old post, please open a new post with you question. To increase the odds of getting useful answ…
Comment: DESeq2 rerun returns different results
by
ATpoint
★ 4.5k
DESeq2 is deterministic if you use same input, code and software versions. Make sure to version-control your environment by at least tracki…
Answer: [How to construct a model.matrix ]
by
Gordon Smyth
51k
> Initially, I simply used > `lm(Epigenetic_age ~ Age_group + Age + Sex + PC1 + PC2 + PC3 + PC4 + PC5 + B + CD4T + CD8T + Mono + NK + Neutr…
Comment: How to extract phastcons score for all protein coding genes and lncRNAs using Ge
by
rania.alanany
• 0
Hi Robert, Thank you for the explanation, But I am still little bit confused, Is the annotation package (TxDb.Hsapiens.UCSC.hg38.knownGene)…
Votes
A: Some questions for remove batch effect by using mnnCorrect
A: Recommendations for combining multiple 10x runs into one SingleCellExperiment
Answer: [How to construct a model.matrix ]
Answer: Handling biological replicates in DESeq2
Comment: biomaRt rnorvegicus_gene_ensembl not available anymore
Awards
• All
Popular Question
to
Robert Castelo
★ 3.4k
Popular Question
to
Michael Stadler
▴ 350
Scholar
to
ATpoint
★ 4.5k
Commentator
to
James W. MacDonald
67k
Popular Question
to
Stefano Mangiola
▴ 20
Locations
• All
France,
9 minutes ago
United States,
9 minutes ago
United States,
25 minutes ago
United Kingdom,
28 minutes ago
Germany,
34 minutes ago
Traffic: 677 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6