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refseq
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How can I translate NM_xxx.y:c.xxG>C mRNA sequences to corresponding NC_xxx.y:g.xxxC>G chromosomal coordinates?
refseq
Bioconductor
conversion
3.5 years ago
heiko_kin
▴ 60
0
votes
0
replies
531
views
Conversion of RefSeq data to chromosomal position
RefSeq
Chromosome
Mutalyzer
4.2 years ago
heiko_kin
▴ 60
0
votes
5
replies
2.0k
views
Changing Gene ID annotation style - working with Salmon output [NM...] and resulting count files are numeric-only IDs
tximport
Gene IDs
txdb
RefSeq
Salmon
updated 4.4 years ago by
Michael Love
42k • written 4.4 years ago by
holmkn
• 0
1
vote
3
replies
2.9k
views
ENSEBL gene_ID in edgeR analysis
edgeR
ENEMBL
RefSeq
updated 5.2 years ago by
Gordon Smyth
51k • written 5.2 years ago by
mzillur
• 0
6
votes
7
replies
2.6k
views
makeTxDbFromUCSC fails to download refLink table
genomicfeatures
maketxdbfromucsc
refseq
updated 7.9 years ago by
Hervé Pagès
16k • written 7.9 years ago by
Sebastien Vigneau
▴ 10
8
votes
7
replies
3.6k
views
Generating a proper TxDb instance from NCBI GFF Annotations File
ncbi
refseq
maketxdbfromgff
fetchExtendedChromInfoFromUCSC
genomeinfodb
updated 8.4 years ago by
Hervé Pagès
16k • written 8.4 years ago by
gokcen.eraslan
▴ 10
2
votes
2
replies
2.7k
views
using the "promoters" function with an "OrganismDb" to generate "GRanges" with "REFSEQ" rather than UCSC gene names
promoter
granges
refseq
ucsc
organismdb
updated 8.6 years ago by
Robert Castelo
★ 3.3k • written 8.6 years ago by
efoss
▴ 10
4
votes
1
reply
3.8k
views
getting the longest transcript by gene from Refseq
refseq
annotationhub
updated 8.7 years ago by
Martin Morgan
25k • written 8.7 years ago by
dalloliogm
▴ 50
2
votes
2
replies
1.7k
views
customProDB: issues getting dbSNP data for human (hg19)
customprodb
dbsnp
refseq
varianttools
updated 8.9 years ago by
xiaojing.wang
▴ 50 • written 8.9 years ago by
kristenbeck527
• 0
9 results • Page
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Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
by
James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
Answer: Limma model.matrix design with batch effect and different life stages proportion
by
Masongeorge
• 0
Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
Comment: error loading collectTRI regulon
by
deeenes
▴ 50
I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…
Answer: GESA with certain gene list returns no result with human genom, but many result
by
James W. MacDonald
66k
Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…
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Comment: error loading collectTRI regulon
A: Scaling option in fastMNN
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
A: How to do a confounding variable adjustment without using the treatment informat
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