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blast
•
reset
0
votes
0
replies
546
views
Visualize blastx output in R
blast
2.2 years ago
kvigil
• 0
1
vote
2
replies
1.7k
views
blastn for selected database and/or organism
blast
blastsequences
updated 7.0 years ago by
James W. MacDonald
68k • written 7.0 years ago by
aush
▴ 40
0
votes
0
replies
1.2k
views
batch blast matrix of protein sequences from R
R
blast
blastsequences
protein
7.3 years ago
andres.susrud
• 0
1
vote
2
replies
2.5k
views
blastSequences queries failing due to BLAST switch to https?
annotate
blastSequences
BLAST
https
updated 8.6 years ago by
Martin Morgan
25k • written 8.6 years ago by
ariel.hecht
• 0
3
votes
8
replies
9.6k
views
Which package to run blast
blast
updated 8.7 years ago by
Malcolm Cook
★ 1.6k • written 8.7 years ago by
biomiha
▴ 20
0
votes
0
replies
1.0k
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings
blast
variantannotation
8.7 years ago
li lilingdu
▴ 450
0
votes
1
reply
1.9k
views
Primer-blast with bioconductor packages
primer
blast
updated 8.9 years ago by
Hervé Pagès
16k • written 9.0 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
5
replies
6.8k
views
Blastp - through R
blast
R
9.2 years ago
maahpishanu
• 0
4
votes
13
replies
5.4k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation
blast
biostrings
updated 9.8 years ago by
Martin Morgan
25k • written 9.8 years ago by
Mathilde
• 0
2
votes
2
replies
2.2k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
10.5 years ago
b.stielow
• 0
4
votes
3
replies
5.4k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO
BLAST
annotation
updated 10.5 years ago by
Marc Carlson
★ 7.2k • written 10.6 years ago by
Jon Bråte
▴ 260
11 results • Page
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Comment: GSEA preranked analysis downstream of DEseq2
by
Ajay
• 0
`logFC * -log10(pval)` seems to be the pi-score proposed in this [paper][1] [1]: https://pmc.ncbi.nlm.nih.gov/articles/PMC3957066/
Comment: error in ChAMP loading file
by
janwilseo
• 0
Any update on this post? I also had an issue with this. [erosion control](https://charlestonhydroseeding.com/)
Answer: CluserProfiler message "No gene can be mapped"
by
James W. MacDonald
68k
Two things. First, the order of your term2gene is backwards (should be term and then gene, like the name), and by default `enricher` adjust…
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis
by
donnycrimson
• 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender
by
donnycrimson
• 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Votes
DiffBind; Error: No sites have activity greater than filter value
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
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