Bioconductor Blast

Showing : blast • reset

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515

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blast

23 months ago kvigil • 0

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1.6k

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blast blastsequences

updated 6.7 years ago by James W. MacDonald 67k • written 6.7 years ago by aush ▴ 40

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1.1k

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R blast blastsequences protein

7.0 years ago andres.susrud • 0

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2.4k

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annotate blastSequences BLAST https

updated 8.3 years ago by Martin Morgan 25k • written 8.3 years ago by ariel.hecht • 0

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9.1k

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blast

updated 8.4 years ago by Malcolm Cook ★ 1.6k • written 8.4 years ago by biomiha ▴ 20

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984

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Biostrings blast variantannotation

8.5 years ago li lilingdu ▴ 450

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1.8k

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primer blast

updated 8.7 years ago by Hervé Pagès 16k • written 8.7 years ago by Vinicius Henrique da Silva ▴ 40

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6.3k

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blast R

9.0 years ago maahpishanu • 0

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5.1k

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annotation blast biostrings

updated 9.5 years ago by Martin Morgan 25k • written 9.5 years ago by Mathilde • 0

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2.1k

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blast annotate biostrings export fasta

10.2 years ago b.stielow • 0

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5.2k

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GO BLAST annotation

updated 10.3 years ago by Marc Carlson ★ 7.2k • written 10.3 years ago by Jon Bråte ▴ 260

11 results • Page 1 of 1

Recent ...

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Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10

I see. Thank you ATpoint!

Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0

Thanks James!

Votes

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

A: PDCD1 missing from TxDb.Hsapiens.UCSC.hg38.knownGene?

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Popular Question to bastien_chassagnol • 0