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blast
•
reset
0
votes
0
replies
540
views
Visualize blastx output in R
blast
2.1 years ago
kvigil
• 0
1
vote
2
replies
1.7k
views
blastn for selected database and/or organism
blast
blastsequences
updated 6.9 years ago by
James W. MacDonald
68k • written 6.9 years ago by
aush
▴ 40
0
votes
0
replies
1.2k
views
batch blast matrix of protein sequences from R
R
blast
blastsequences
protein
7.2 years ago
andres.susrud
• 0
1
vote
2
replies
2.5k
views
blastSequences queries failing due to BLAST switch to https?
annotate
blastSequences
BLAST
https
updated 8.5 years ago by
Martin Morgan
25k • written 8.5 years ago by
ariel.hecht
• 0
3
votes
8
replies
9.5k
views
Which package to run blast
blast
updated 8.6 years ago by
Malcolm Cook
★ 1.6k • written 8.6 years ago by
biomiha
▴ 20
0
votes
0
replies
1.0k
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings
blast
variantannotation
8.6 years ago
li lilingdu
▴ 450
0
votes
1
reply
1.9k
views
Primer-blast with bioconductor packages
primer
blast
updated 8.9 years ago by
Hervé Pagès
16k • written 8.9 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
5
replies
6.6k
views
Blastp - through R
blast
R
9.2 years ago
maahpishanu
• 0
4
votes
13
replies
5.3k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation
blast
biostrings
updated 9.7 years ago by
Martin Morgan
25k • written 9.7 years ago by
Mathilde
• 0
2
votes
2
replies
2.1k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
10.4 years ago
b.stielow
• 0
4
votes
3
replies
5.4k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO
BLAST
annotation
updated 10.5 years ago by
Marc Carlson
★ 7.2k • written 10.5 years ago by
Jon Bråte
▴ 260
11 results • Page
1 of 1
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Comment: DESeq2 - human data, weird results, troubleshooting
by
bd2000
▴ 30
I didn't include all of my code the post would be too long. Here's a link to my GitHub if anyone would like to see the full code: [Full Rst…
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
James W. MacDonald
68k
The simple answer is that the within-group variability is much higher for the first gene as compared to the second. The Wald statistic is j…
Comment: DESeq: Gene is not flagged as differentially expressed despite count data showin
by
ATpoint
★ 4.8k
> since there doesn't seem to be as much count variability, No? Your CD45 samples range on normalized scale from 2 to 3255. That's 3 orde…
Comment: Ensembl site unresponsive via biomaRt
by
darylruiz6545
• 0
Thank you so much for sharing the link.
Comment: compute_fasta_digest does not match Salmon index hash
by
Alex
• 0
I use the `fastaDigest` tool from [COMBINE-lab/fastaDigest](https://github.com/COMBINE-lab/FastaDigest/), which has the function `compute_f…
Votes
Answer: DESeq: Gene is not flagged as differentially expressed despite count data showin
Two EPIC Methylation Array Analysis Questions
How to get DMR for Infinium methylation EPIC v2
A: GEOquery Fails to Download Series Matrix File
Comment: Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
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