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BLAST
•
reset
0
votes
0
replies
381
views
Visualize blastx output in R
blast
15 months ago
kvigil
• 0
1
vote
2
replies
1.3k
views
blastn for selected database and/or organism
blast
blastsequences
updated 6.1 years ago by
James W. MacDonald
66k • written 6.1 years ago by
aush
▴ 40
0
votes
0
replies
941
views
batch blast matrix of protein sequences from R
R
blast
blastsequences
protein
6.4 years ago
andres.susrud
• 0
1
vote
2
replies
2.2k
views
blastSequences queries failing due to BLAST switch to https?
annotate
blastSequences
BLAST
https
updated 7.7 years ago by
Martin Morgan
25k • written 7.7 years ago by
ariel.hecht
• 0
3
votes
8
replies
8.4k
views
Which package to run blast
blast
updated 7.8 years ago by
Malcolm Cook
★ 1.6k • written 7.8 years ago by
biomiha
▴ 20
0
votes
0
replies
858
views
After mapping one Sanger sequence read (about 900bp) to hg19 using blastn, How can I get variants presented as reference-based position and base ch…
Biostrings
blast
variantannotation
7.8 years ago
li lilingdu
▴ 450
0
votes
1
reply
1.5k
views
Primer-blast with bioconductor packages
primer
blast
updated 8.0 years ago by
Hervé Pagès
16k • written 8.0 years ago by
Vinicius Henrique da Silva
▴ 40
0
votes
5
replies
5.6k
views
Blastp - through R
blast
R
8.3 years ago
maahpishanu
• 0
4
votes
13
replies
4.5k
views
How to create an output file with sequence ID's from multiple BLAST result using blastSequences in "Biostrings"
annotation
blast
biostrings
updated 8.9 years ago by
Martin Morgan
25k • written 8.9 years ago by
Mathilde
• 0
2
votes
2
replies
1.9k
views
BLAST export library 'annotate'
blast
annotate
biostrings
export
fasta
9.6 years ago
b.stielow
• 0
4
votes
3
replies
4.9k
views
Use R/Bioconductor to match BLAST hits to GO terms?
GO
BLAST
annotation
updated 9.6 years ago by
Marc Carlson
★ 7.2k • written 9.7 years ago by
Jon Bråte
▴ 250
11 results • Page
1 of 1
Recent ...
Replies
Comment: How to compare subset of samples from VCF files
by
Gordon Smyth
50k
Welcome to Bioconductor support. Did you know that you can delete your old postings if they haven't received an answer yet? Instead of ap…
Comment: How to compare subset of samples from VCF files
by
Marco
• 0
Here's the vcf file as code block ``` ##fileformat=VCFv4.2 ##INFO=<ID=DP,Number=1,Type=Integer,Description="Approximate read depth"> ##FOR…
Comment: Gviz and custom database
by
James W. MacDonald
66k
The vignette for `Gviz` says you can use a `DNAStringSet`, generated using `Biostrings`. Have you tried that?
Comment: Gviz and custom database
by
luigi.faino
• 0
Dear, this is not what I need. I need to transform a fasta sequence in a genome track usable in Gviz. L
Answer: Gviz and custom database
by
James W. MacDonald
66k
https://bioconductor.org/packages/release/bioc/vignettes/txdbmaker/inst/doc/txdbmaker.html
Votes
Answer: makeExampleDESeqDataSet using pilot data
Answer: Checking/updating package versions
Answer: Why is longestConsecutive() depreceated in version 2.72 (BioC version 3.19)?
convert data frame of Entrez IDs to Gene Symbols
Answer: LRT, pairwise comparisons and p-value adjustment
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Gordon Smyth
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Marco Blanchette
▴ 30
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Fred Hutch (Recruiting)
▴ 40
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James W. MacDonald
66k
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Levi Waldron
★ 1.1k
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