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7.5 years ago • updated 4.2 years ago
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Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★
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Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
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0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**'
```
result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
•
0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Comment: build samplesheet and plot profile
by
yf
•
0
![enter image description here][1]
[1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a
Answer: I am having issues with bowtie2_build
by
James W. MacDonald
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Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
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