Showing : TOPGO • reset
0
votes
5
replies
775
views
Error when running topGO with KS statistic and elim agorithm
topGO
11 months ago • updated 10 months ago A. denDekker • 0
1
vote
2
replies
981
views
Access genes associated with GO terms for a topGO object created with gene2GO
topGO
15 months ago Dan • 0
0
votes
2
replies
1.3k
views
enrichPlot error when plotting topGO results
topGO enrichplot
updated 18 months ago by 68k • written 18 months ago by • 0
0
votes
1
reply
820
views
library(topGO) query
topGO scRNAseq
updated 21 months ago by ▴ 780 • written 21 months ago by • 0
1
vote
1
reply
887
views
urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 24 months ago by ▴ 40 • written 24 months ago by • 0
0
votes
1
reply
1.4k
views
In .local(object, test.stat, ...) : No enrichment can pe performed - there are no feasible GO terms!
topGO
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
0
votes
0
replies
721
views
topGO: how do I retrieve my genes contributing to the GO term enrichment
gene enrichment topGO GO retrieve
2.0 years ago Priya • 0
1
vote
1
reply
1.8k
views
topGo error loading data
topGO GO
2.3 years ago peter • 0
1
vote
0
replies
1.2k
views
adjusted p-values with topGO elim.KS method
topGO Ontology DifferentialExpression
2.6 years ago Kevin Gregory ▴ 10
0
votes
4
replies
4.2k
views
How to get significant genes annotated to go term using TopGO?
topGO
updated 2.8 years ago by ▴ 760 • written 2.8 years ago by ▴ 30
1
vote
3
replies
2.9k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.8 years ago by 68k • written 2.8 years ago by ▴ 60
0
votes
5
replies
3.2k
views
GO enrichment with non-model organism, supplying GO mappings
clusterProfiler goseq topGO DESeq2
updated 2.9 years ago by 68k • written 2.9 years ago by ▴ 30
0
votes
0
replies
807
views
What exactly are Nontrivial node in topGO analysis?
topGO GO
3.0 years ago theophile • 0
0
votes
6
replies
1.9k
views
extract significant gene list from specific GO namber
topGO
updated 3.1 years ago by 68k • written 3.1 years ago by • 0
4
votes
7
replies
2.8k
views
Updating org.Sc.sgd.db, and integration with topGO
GeneTonic org.Sc.sgd.db pcaExplorer topGO EnrichmentBrowser
updated 3.2 years ago by ▴ 180 • written 3.2 years ago by • 0
0
votes
1
reply
1.5k
views
Help me do a gene enrichment analysis
DESeq2 topGO heatmaps
updated 3.7 years ago by ▴ 40 • written 3.7 years ago by • 0
0
votes
1
reply
1.2k
views
Gene ontology of differentially expressed genes in R
topGO limma DEP
updated 3.7 years ago by 68k • written 3.7 years ago by • 0
0
votes
1
reply
1.1k
views
topGo GenTable returns result column as character
GenTable topGO
updated 4.1 years ago by 68k • written 4.1 years ago by • 0
0
votes
0
replies
830
views
topGO weight01 method: potential bug in the code
topGO weight01
4.2 years ago Vladimir • 0
1
vote
3
replies
1.9k
views
topGO enrichment analysis, ontology selection.
topGO enrichmentanalysis geneontology
updated 4.2 years ago by ▴ 760 • written 4.2 years ago by • 0
2
votes
0
replies
1.3k
views
Saving the results of the topGO package as an R object (rda/rds file).
RNASeq GO topGO Pathways
4.2 years ago Ben ▴ 50
1
vote
1
reply
2.4k
views
TopGO : significant GO term, but 0 gene significant in this GO term (with elim-ks method)
topGO
updated 4.2 years ago by 68k • written 4.2 years ago by • 0
2
votes
1
reply
2.3k
views
topGO expected values showing NA
GO hgu133plus2 topGO GO hgu133plus2 topGO
updated 4.3 years ago by ▴ 20 • written 12.1 years ago by ▴ 340
1
vote
3
replies
1.8k
views
topGo custom Annotation table
customannotation enrichmentanalysis topGO
updated 4.3 years ago by 68k • written 4.3 years ago by • 0
0
votes
0
replies
986
views
Functional enrichment analysis for genomic data from non-model organism annotated based on model organism
DOSE hypeR goTools GOstats topGO
4.4 years ago Madza Farias-Virgens • 0
0
votes
7
replies
4.1k
views
topGO: GO term enrichment analysis of differentially expressed genes (!) including fold-change (!)
foldchange topGO DifferentialExpression enrichment
updated 4.5 years ago by 52k • written 4.5 years ago by ▴ 20
0
votes
4
replies
1.5k
views
topGO "argument is of length zero" error
GO.db topGO
updated 4.5 years ago by 68k • written 4.5 years ago by • 0
1
vote
6
replies
2.0k
views
How to create geneselectionfunction in TopGO: Error in .local(.Object, ...) : allGenes should be a factor or a numeric vector
R TopGO Geneenrichment
updated 4.6 years ago by 68k • written 4.6 years ago by • 0
3
votes
4
replies
2.1k
views
Different geneset same p-values in topGO
topgo bug
8.3 years ago • updated 4.6 years ago Lluís Revilla Sancho ▴ 760
4
votes
4
replies
1.8k
views
Replicating GO website analysis with bioconductor packages (topGO?)
topGO Gene Ontology enrichment panther.db
updated 4.6 years ago by 52k • written 4.6 years ago by ▴ 120
2
votes
3
replies
1.5k
views
Error in topGO analysis
software error topGO go
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by • 0
0
votes
3
replies
1.3k
views
Use topGOdata in devtools package
topGO devtools R
updated 4.7 years ago by 68k • written 4.7 years ago by • 0
1
vote
1
reply
1.4k
views
Error in GO enrichment with topGO
topGO microarray Gene ontology
updated 4.8 years ago by 68k • written 4.8 years ago by ▴ 10
4
votes
8
replies
7.1k
views
topGO error: allGenes should be a factor or a numeric vector
topGO topgo GO term analysis
updated 4.8 years ago by ★ 4.0k • written 4.8 years ago by ▴ 10
4
votes
8
replies
3.0k
views
Don't let TopGo to trimm long GO names
go software error topgo rna-seq
updated 2.2 years ago by 68k • written 4.9 years ago by ▴ 30
5
votes
7
replies
1.5k
views
Unexpected error with topGO, cannot build topGOdata object
topGO
5.0 years ago abf ▴ 30
0
votes
1
reply
915
views
Missing ALL library in BiocManager using topGO
topGO
updated 5.0 years ago by 68k • written 5.0 years ago by • 0
1
vote
3
replies
2.0k
views
TopGO significant genes
TopGO GO
5.0 years ago Al-a ▴ 10
0
votes
14
replies
3.1k
views
annFUN error TOPGO
TOPGO annFUN error
updated 5.1 years ago by ★ 4.0k • written 5.1 years ago by • 0
0
votes
1
reply
1.2k
views
Diagnosing topGo issue - single enriched gene per enriched GO term
topGo gene enrichment ontology analysis
5.7 years ago s.bourne • 0
3
votes
3
replies
1.6k
views
Discrepancies between topGO output and input
go topGO gene ontology enrichment
updated 5.8 years ago by 68k • written 5.8 years ago by • 0
2
votes
2
replies
2.7k
views
topGO package unable to find library(ALL) and data(ALL)
topGO software error
updated 5.9 years ago by 68k • written 5.9 years ago by ▴ 60
0
votes
3
replies
1.6k
views
usage of topGO after limma
limma topGO microarray
updated 6.1 years ago by 52k • written 6.1 years ago by • 0
0
votes
0
replies
1.4k
views
topGO::annFUN.org() problem due to case-sensitivity of OrgDb field names
topGO AnnotationForge
6.1 years ago psutton • 0
1
vote
1
reply
1.4k
views
How to retreive topGO significant IDs of genes after enrichment test ?
topGO significant enrichment genes IDs
6.3 years ago • updated 6.2 years ago David ROUX ▴ 20
0
votes
1
reply
1.9k
views
topGO: "There are no adj nodes for node"
software error topGO org.hs.eg.db
6.4 years ago natske ▴ 10
2
votes
6
replies
2.4k
views
topGO: GO terms in gene annotation do not match significant GO term output
rnaseq topgo go enrichment
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
3
votes
9
replies
6.0k
views
topGO "invalid argument to unary operator"
software error topgo
updated 6.4 years ago by 68k • written 6.4 years ago by • 0
0
votes
0
replies
1.4k
views
topGO analysis runTest: non-numeric argument to binary operator
topGO
6.5 years ago Dave Th. • 0
0
votes
0
replies
1.6k
views
topGO: how to print GO descriptions only when using showSigOfNodes?
topgo
6.6 years ago anton.kratz ▴ 60
50 results • Page 1 of 1
Recent ...
Replies
Comment: Controlling for batch and estrus cycle using DESeq2 in RNA-seq analysis by donnycrimson • 0
One potential workaround might be to adjust for these factors using a combination of design matrices perhaps including batch as a covariate…
Comment: DESeq2 Design controlling for gender by donnycrimson • 0
On a lighter note, while you are tackling such complex data, you might enjoy a quick break playing the [Slope Game](https://slopegame.lol)…
Comment: MetaDE.pvalue: Error in xj[i]: invalid subscript type 'list' by donnycrimson • 0
Have you considered streamlining how you handle data input to mitigate these issues. It might help to define the parameters more strictly …
Comment: CluserProfiler message "No gene can be mapped" by Carolina • 0
There is, the overlap that reads out is ( Genes in common: 368 of 368 ). Here is the link for [background genes][1], [term2gene][2], [term2…
Comment: Differing results with DESeq2 by JKim • 0
My two cents. I think it would be more straightforward if you use cellmeans model. Have a look at [A guide to creating design matrices for …
Votes
remove X and Y chromosome genes in RNA-seq data using DESeq2 pipeline
How to remove X & Y chromosome genes from RNAseq data
Is it advisable to remove X and Y chromosome genes in mouse bulk RNA-seq data at the level of the count matrix?
A: Unbalanced experiment with multiple samples from each patient.
A: Understanding contrasts limma
Awards • All
Autobiographer to Paul Harrison ▴ 100
Popular Question to mohammedtoufiq91 ▴ 10
Popular Question to Kinnary ▴ 20
Popular Question to sergisayolspuig ▴ 80
Popular Question to richardallenfriedmanbrooklyn ▴ 30
Locations • All
United Kingdom, just now
United States, 18 minutes ago
Denmark, 31 minutes ago
United States, 33 minutes ago
EMBL Heidelberg, 1 hour ago
Traffic: 1034 users visited in the last hour
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6