Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
Packages
•
reset
4
votes
0
replies
1.1k
views
News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
11 months ago
shepherl
4.1k
5
votes
1
reply
1.5k
views
News:
Bioconductor 3.18 is Released!
Packages
Bioconductor
Release
Software
written 17 months ago by
shepherl
4.1k
0
votes
0
replies
1.0k
views
News:
Bioconductor 3.17 is Released!
Packages
Release
Bioconductor
Software
23 months ago
shepherl
4.1k
0
votes
2
replies
865
views
Bioconductor API or dataset
Bioconductor
Packages
Dataset
API
updated 2.2 years ago by
Marcel Ramos
700 • written 2.2 years ago by
dab0012
• 0
1
vote
0
replies
1.2k
views
News:
Bioconductor 3.16 is Released!
Release
Packages
Bioconductor
Software
2.4 years ago
shepherl
4.1k
4
votes
0
replies
1.0k
views
News:
Bioconductor Release 3.16 Schedule
Release
Devel
packages
release
devel
2.6 years ago
shepherl
4.1k
0
votes
1
reply
1.5k
views
trouble installing DESeq2
install
packages
R
DESeq2
updated 2.9 years ago by
shepherl
4.1k • written 2.9 years ago by
eruan1
• 0
0
votes
2
replies
1.6k
views
cannot install various functions in R
GRanges
packages
installation
updated 2.9 years ago by
shepherl
4.1k • written 2.9 years ago by
Eli
• 0
8
votes
0
replies
1.2k
views
News:
Bioconductor 3.15 is Released!
Software
Release
Packages
Bioconductor
3.0 years ago • updated 2.9 years ago
shepherl
4.1k
1
vote
6
replies
3.7k
views
Bioconductor installation problems
packages
installation
Bioconductor
updating
updated 3.0 years ago by
Marcel Ramos
700 • written 3.1 years ago by
jose
▴ 10
1
vote
0
replies
1.1k
views
News:
Bioconductor Release 3.15 Schedule
Devel
release
packages
Release
devel
3.1 years ago
shepherl
4.1k
8
votes
0
replies
1.2k
views
News:
Bioconductor 3.14 is Released!
release
Packages
Software
Release
Bioconductor
3.5 years ago • updated 3.4 years ago
shepherl
4.1k
1
vote
0
replies
1.2k
views
News:
Bioconductor Release 3.14 Schedule
devel
Devel
release
packages
Release
3.6 years ago
shepherl
4.1k
0
votes
0
replies
1.1k
views
News:
knitr ERROR on Biocondcutor builders
Devel
Bioconductor
Packages
BuildReport
devel
3.7 years ago
shepherl
4.1k
0
votes
1
reply
909
views
Notification for package release?
packages
updated 3.9 years ago by
Lluís Revilla Sancho
▴ 760 • written 3.9 years ago by
curiousmind007
▴ 10
5
votes
0
replies
1.3k
views
News:
Bioconductor 3.13 is Released!
Release
Bioconductor
Packages
Software
3.9 years ago
shepherl
4.1k
4
votes
0
replies
1.2k
views
News:
Bioconductor 3.12 is Released!
Software
release
Bioconductor
Packages
Release
4.4 years ago
shepherl
4.1k
0
votes
0
replies
1.3k
views
News:
Bioconductor Release 3.12 Schedule Posted
packages
release
deadlines
builds
News
4.6 years ago
shepherl
4.1k
3
votes
3
replies
1.8k
views
Incomplete Install of Bioconductor Packages
Installation
Packages
Missing
updated 4.7 years ago by
Laurent Gatto
1.6k • written 4.9 years ago by
sreedta8
▴ 10
0
votes
3
replies
1.8k
views
Cant update old packages
software error
packages
update
updated 4.7 years ago by
James W. MacDonald
68k • written 4.7 years ago by
bs14ab
• 0
0
votes
4
replies
2.7k
views
Error: unexpected string constant in "suppressPackageStartupMessages(.getRequiredPackages(quietly = TRUE)), when installed the package "Mus.musculus"…
install
packages
Mus.musculus
updated 4.8 years ago by
Kevin Blighe
★ 4.0k • written 4.8 years ago by
443606623
• 0
1
vote
1
reply
1.1k
views
Error when installing edgeR and DESeq package
software error
packages
updated 4.8 years ago by
James W. MacDonald
68k • written 4.8 years ago by
yassiflower
• 0
1
vote
5
replies
3.6k
views
Updating Out of Date BiocManager Packages
biocmanager
valid
update
packages
updated 4.9 years ago by
Kevin Blighe
★ 4.0k • written 4.9 years ago by
bs14ab
• 0
4
votes
0
replies
1.0k
views
News:
Bioconductor 3.11 is Released!
software
bioconductor
release
packages
News
5.0 years ago
shepherl
4.1k
3
votes
4
replies
2.0k
views
Can't install packages on R or via Bioconductor
R
installation
packages
annotatr
biocmanager
5.0 years ago
dakarai_esgdaille
▴ 10
1
vote
0
replies
1.0k
views
News:
Bioconductor Release 3.11 Schedule Posted
release
deadlines
builds
packages
News
5.1 years ago
shepherl
4.1k
0
votes
2
replies
1.5k
views
Unable to install package
packages
installation
GenomeGraphs
updated 5.2 years ago by
James W. MacDonald
68k • written 5.2 years ago by
alex
• 0
2
votes
2
replies
1.3k
views
News:
Bioconductor Devel 3.11 Notification
software
bioconductor
packages
reports
News
5.4 years ago
shepherl
4.1k
6
votes
0
replies
1.1k
views
News:
Bioconductor 3.10 is released!!
release
software
packages
bioconductor
News
5.4 years ago
shepherl
4.1k
0
votes
1
reply
1.3k
views
Couldnt find getAE and ae2bioc?
getAE
ae2bioc
bioconductor
packages
library
updated 5.6 years ago by
Mike Smith
★ 6.6k • written 5.6 years ago by
kodherif
• 0
1
vote
4
replies
2.1k
views
Merging two files based on the identifier column (gene symbols)?
merge
files
R
packages
gene annotations
5.6 years ago
mohammedtoufiq91
▴ 10
0
votes
1
reply
5.8k
views
monocle error at orderCells
scRNA
monocle
packages
Tutorial
5.6 years ago
444579004
• 0
0
votes
1
reply
2.4k
views
R: oligo packages install error
oligo
packages
error
updated 5.8 years ago by
Martin Morgan
25k • written 5.8 years ago by
get3232
• 0
0
votes
1
reply
2.3k
views
Installation of r2excel package
github
packages
updated 6.2 years ago by
Gordon Smyth
52k • written 6.2 years ago by
thkapell
▴ 10
2
votes
1
reply
1.3k
views
Large Size of R packages containing S4 classes
S4
packages
updated 6.6 years ago by
Michael Lawrence
★ 11k • written 6.6 years ago by
lukaszbednarz
▴ 10
1
vote
1
reply
1.2k
views
News:
DEADLINE: commits to Bioc 3.7
release
bioconductor
packages
package updates
News
7.0 years ago
shepherl
4.1k
0
votes
2
replies
2.3k
views
Issues installing packages miniconda environment
bioclite
deseq2
miniconda
packages
7.1 years ago
cpat
• 0
2
votes
2
replies
1.6k
views
Packages employing RangedSummarizedExperiment objects
rangedsummarizedexperiment
packages
granges
iranges
updated 7.3 years ago by
Aaron Lun
★ 28k • written 7.3 years ago by
rbronste
▴ 60
1
vote
2
replies
2.8k
views
Error : object path is not exported by namespace:Rsamtools
packages
installation problem
rsamtools
chippeakanno
ensembldb
7.3 years ago
inzirio
▴ 10
0
votes
1
reply
1.3k
views
News:
Single Package Builder Updates and Testing
packages
review
spb
News
7.3 years ago
shepherl
4.1k
0
votes
2
replies
1.5k
views
News:
Single Package Builder / New Package Submission
new submission
build report
packages
News
7.4 years ago
shepherl
4.1k
12
votes
5
replies
2.3k
views
News:
DOI for packages
DOI
doi
packages
citation
publication
News
7.5 years ago
shepherl
4.1k
3
votes
3
replies
1.8k
views
Question regarding best bioconductor package for RNA-seq
rna-seq
packages
updated 8.1 years ago by
b.nota
▴ 370 • written 8.1 years ago by
Maximilian
▴ 10
3
votes
6
replies
2.6k
views
List of package names with versions
packages
updated 9.1 years ago by
Sushant Pawar
• 0 • written 9.1 years ago by
nathan.watsonhaigh
• 0
0
votes
0
replies
1.7k
views
News:
New Package Submission Deadline
Packages
News
9.1 years ago
Martin Morgan
25k
0
votes
4
replies
1.8k
views
Newbee question: how to output/write data (measureents) to a text file?
packages
9.3 years ago • updated 9.2 years ago
Reinert Korsnes
• 0
2
votes
1
reply
3.3k
views
Installation of bioConductor packages
installation
packages
bioconductor
all
updated 9.4 years ago by
Martin Morgan
25k • written 9.4 years ago by
av
• 0
2
votes
4
replies
2.8k
views
Package RnBeads not available for R 3.1.2?
RnBeads
packages
R 3.1.2
9.7 years ago
bmreilly
• 0
1
vote
11
replies
2.6k
views
Bioconductor Software Packages raw (not html) detail view?
packages
details
10.1 years ago • updated 9.7 years ago
smoretti
▴ 10
0
votes
0
replies
1.8k
views
what R package prediction secondary structure for amino acids
packages
10.0 years ago
m016648
• 0
50 results • Page
1 of 1
Recent ...
Replies
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
Luca
• 0
Thanks for your time on this, I have also never seen anything quite like this before neither. The only confounding variable I received in t…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
by
ATpoint
★ 4.8k
If it was global changes then (in my head) why is there two populations of peaks (that to me indicates some sort of confouder) and also, if…
Comment: fast apply on RleList
by
story.benjamin
▴ 20
Here's a test data.set if you need: library(GenomicRanges) library(rtracklayer) # gr test test.gr <- GRanges(seqnames…
Answer: BiocParallel_1.40.1.tar.gz not available
by
shepherl
4.1k
Please try again. We have updated the BiocParallel package and BiocManager should work as expected (pulling 1.40.2 as source). The Landin…
Comment: BiocParallel_1.40.1.tar.gz not available
by
Johan
• 0
Your approach works, but it implies manually rejecting the update of BiocParallel at each use of `BiocManager::install()`, which is pretty …
Votes
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
Limma outputs different results for same sample?
Awards
• All
Popular Question
to
story.benjamin
▴ 20
Popular Question
to
snijesh
▴ 200
Popular Question
to
Gordon Smyth
52k
Popular Question
to
pcantalupo
▴ 10
Popular Question
to
bioinformaticssrm2011
• 0
Locations
• All
UPF, Barcelona, Spain,
5 minutes ago
The city by the bay,
7 minutes ago
San Diego,
30 minutes ago
Canada,
55 minutes ago
Seattle, WA, United States,
1 hour ago
Traffic: 451 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6