Showing : MethylationArrayData • reset
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 4 months ago by 67k • written 4 months ago by ▴ 10
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420
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
10 months ago Giovanni Calice ▴ 160
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Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
13 months ago kyj2226 • 0
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
14 months ago aldea85 • 0
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3
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 17 months ago by 67k • written 17 months ago by • 0
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780
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
18 months ago Arianna • 0
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
19 months ago Irene • 0
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1
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806
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 20 months ago by ▴ 40 • written 21 months ago by • 0
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1.5k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 21 months ago by ▴ 200 • written 21 months ago by • 0
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 21 months ago by 52k • written 22 months ago by • 0
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4
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1.5k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 22 months ago by 67k • written 22 months ago by • 0
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1.8k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 22 months ago by • 0
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2
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2.0k
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ChAMP package:Error in cmdscale(d) : 'k' must be in {1, 2, .. n - 1}
MethylationArrayData
2.2 years ago shuangshuang • 0
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1.6k
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Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
2.8 years ago fluentin44 • 0
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
2.8 years ago Jitendra ▴ 10
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1.1k
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Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.1 years ago Paulina • 0
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1.0k
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DNA methylation EPIC array and ChromHMM
chromhmmData MethylationArrayData
3.4 years ago macsue.jacques ▴ 10
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1.0k
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minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
3.4 years ago ponche_de_kiwi • 0
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6
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4.0k
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Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.5 years ago FWNL15 • 0
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1
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1.1k
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Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 3.6 years ago by ▴ 780 • written 3.6 years ago by • 0
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1.3k
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How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
3.9 years ago D ▴ 10
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4
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3.4k
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Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData methy Bioconductor minfi
3.9 years ago shweta • 0
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1
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2.7k
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DMR Plot
dmr MethylationArrayData DMRcatedata
updated 4.2 years ago by 67k • written 4.2 years ago by • 0
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Comment: How to sort negative log2FC or FC in RNAseq for GSEA? by QN ▴ 10
Thank you ATpoint for your response! In the result of GSEA, like you indicated, there will be gene sets that have positive NES and gene se…
Comment: EdgeR Biological CVs by ATpoint ★ 4.6k
"Joseph" is a spam bot...
Comment: Problems with oarfish + tximport + swish by Im • 0
Office ta kemon
Answer: How to sort negative log2FC or FC in RNAseq for GSEA? by ATpoint ★ 4.6k
GSEA asks whether there are general shifts in gene expression towards certain terms. Hence, you would not split your results tables but ord…
Comment: EdgeR Biological CVs by James • 0
Thank you Gordon and Joseph. I presume question (1) would be answered by using a prior G0 of 0? For question (2), I was expecting a biolog…
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How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Answer: EdgeR Biological CVs
Comment: EdgeR Biological CVs
Answer: Error in download.file for TCGAutils::symbolsToRanges
Answer: Error in download.file for TCGAutils::symbolsToRanges
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