Showing : MethylationArrayData • reset
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Conumee for EPIC and EPICv2 copy number
conumee CopyNumberVariation MethylationArrayData
10 days ago Adam • 0
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191
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
4 weeks ago charlie.wright • 0
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2
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289
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
4 weeks ago a.alkema • 0
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178
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 6 weeks ago by 68k • written 6 weeks ago by • 0
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421
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 6 months ago by 68k • written 6 months ago by ▴ 10
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461
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
12 months ago • updated 11 months ago Giovanni Calice ▴ 160
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831
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Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
14 months ago kyj2226 • 0
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6
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1.3k
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
16 months ago aldea85 • 0
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3
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1.0k
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 18 months ago by 68k • written 19 months ago by • 0
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840
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
19 months ago Arianna • 0
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2
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1.1k
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
21 months ago Irene • 0
1
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1
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859
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 22 months ago by ▴ 40 • written 22 months ago by • 0
2
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6
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1.6k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 22 months ago by ▴ 230 • written 22 months ago by • 0
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846
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 23 months ago by 52k • written 23 months ago by • 0
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4
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1.6k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.0 years ago by 68k • written 2.0 years ago by • 0
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5
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1.9k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.0 years ago by • 0
0
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2
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2.2k
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ChAMP package:Error in cmdscale(d) : 'k' must be in {1, 2, .. n - 1}
MethylationArrayData
2.4 years ago shuangshuang • 0
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2
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1.7k
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Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
2.9 years ago fluentin44 • 0
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961
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.0 years ago Jitendra ▴ 10
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0
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1.1k
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Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.3 years ago Paulina • 0
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1.0k
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DNA methylation EPIC array and ChromHMM
chromhmmData MethylationArrayData
3.5 years ago macsue.jacques ▴ 10
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1.1k
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minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
3.6 years ago ponche_de_kiwi • 0
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6
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4.2k
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Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.7 years ago FWNL15 • 0
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1
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1.1k
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Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 3.8 years ago by ▴ 780 • written 3.8 years ago by • 0
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0
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1.3k
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How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
4.0 years ago D ▴ 10
1
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4
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3.5k
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Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData methy Bioconductor minfi
4.1 years ago shweta • 0
1
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1
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2.9k
views
DMR Plot
dmr MethylationArrayData DMRcatedata
updated 4.3 years ago by 68k • written 4.3 years ago by • 0
27 results • Page 1 of 1
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Comment: sesameDataCache is not work properly on my system by Samreen • 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages? by wilkinson • 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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