Showing : MethylationArrayData • reset
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Mismatch between Illumina Mouse Methylation BeadChip annotation and genome browsers (UCSC/Ensembl)
methylationArrayAnalysis MethylationArrayData
updated 4 weeks ago by 68k • written 4 weeks ago by • 0
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248
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Conumee for EPIC and EPICv2 copy number
conumee CopyNumberVariation MethylationArrayData
8 weeks ago Adam • 0
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237
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
11 weeks ago charlie.wright • 0
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
12 weeks ago a.alkema • 0
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225
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 3 months ago by 68k • written 3 months ago by • 0
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494
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 7 months ago by 68k • written 7 months ago by ▴ 10
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491
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
14 months ago • updated 13 months ago Giovanni Calice ▴ 160
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944
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Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
16 months ago kyj2226 • 0
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6
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1.4k
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
17 months ago aldea85 • 0
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3
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1.1k
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 20 months ago by 68k • written 20 months ago by • 0
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892
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
21 months ago Arianna • 0
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2
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1.2k
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
23 months ago • updated 22 months ago Irene • 0
1
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1
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889
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 2.0 years ago by ▴ 40 • written 2.0 years ago by • 0
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6
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1.7k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 2.0 years ago by ▴ 230 • written 2.0 years ago by • 0
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903
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 2.1 years ago by 52k • written 2.1 years ago by • 0
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4
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1.7k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
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5
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2.0k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.2 years ago by • 0
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2
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2.3k
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ChAMP package:Error in cmdscale(d) : 'k' must be in {1, 2, .. n - 1}
MethylationArrayData
2.5 years ago shuangshuang • 0
2
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2
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1.7k
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Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
3.1 years ago • updated 3.0 years ago fluentin44 • 0
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983
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.1 years ago Jitendra ▴ 10
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1.1k
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Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.4 years ago Paulina • 0
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1.1k
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DNA methylation EPIC array and ChromHMM
chromhmmData MethylationArrayData
3.7 years ago macsue.jacques ▴ 10
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1.1k
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minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
3.7 years ago ponche_de_kiwi • 0
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6
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4.4k
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Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.8 years ago FWNL15 • 0
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1
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1.2k
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Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 3.9 years ago by ▴ 780 • written 3.9 years ago by • 0
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1.4k
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How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
4.2 years ago D ▴ 10
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4
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3.6k
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Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData methy Bioconductor minfi
4.2 years ago shweta • 0
1
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1
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3.1k
views
DMR Plot
dmr MethylationArrayData DMRcatedata
updated 4.5 years ago by 68k • written 4.5 years ago by • 0
28 results • Page 1 of 1
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Comment: Discrepancies in normalised count data vs unnormalised by AMgroup • 0
Thank you for your reply Here are the count plots for one example CD44: normalised: ![enter image description here][1] unnormalised: !…
Comment: Discrepancies in normalised count data vs unnormalised by ATpoint ★ 4.8k
Please show examples using `plotCounts()`. Custom spreadsheets harbor the risk of parsing errors along the way which very often explains wh…
Comment: Cannot extract size factor from DESeq2 analysis by s.malik • 0
Dear Mike, using tximeta and following code, is this fine to extract normalized counts after `sizeFactors(dds)` gives NULL? `dds <- DESeq…
Comment: Design formula for circadian time-course data for vst() function by Vishnu • 0
Thank you so much for your reply.
Comment: Analyzing TnSeq data with DESeq2 by Tom • 0
[Doncaster Locksmith][1] delivers trusted, efficient security services tailored to your needs. Analyzing TnSeq data with DESeq2 may uncover…
Votes
Answer: How to combine two DESeq2 objects (dds) for analysis
How to combine two DESeq2 objects (dds) for analysis
How can I correctly use phyloseq with Docker?
A: DESeq2::sizeFactors() function does not output the sizeFactor table.
Comment: Filtering after DESeq
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