Showing : MethylationArrayData • reset
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Mismatch between Illumina Mouse Methylation BeadChip annotation and genome browsers (UCSC/Ensembl)
methylationArrayAnalysis MethylationArrayData
updated 13 days ago by 68k • written 13 days ago by • 0
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214
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Conumee for EPIC and EPICv2 copy number
conumee CopyNumberVariation MethylationArrayData
5 weeks ago Adam • 0
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219
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Methylation data - different probes are classified differently based on transcript? (Illumina methylation arrays, using minfi)
minf minfiDataEPIC MethylationArrayData MethylationArray EPICv2manifest
8 weeks ago charlie.wright • 0
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Meffil: error in functional normalization function (Error in rg.to.mu(rg, probes))
methylationArrayAnalysis Normalization Epigenetics MethylationArrayData
9 weeks ago a.alkema • 0
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204
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Unable to find sample sheet file for ChAMP methylation data analysis
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 10 weeks ago by 68k • written 11 weeks ago by • 0
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462
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Annotating DMRs
MethylationArray MethylationArrayData methylationArrayAnalysis
updated 7 months ago by 68k • written 7 months ago by ▴ 10
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480
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TCGAbiolinks STAD project 450k Methylation Beta Value data
MethylationArray normalize450K TCGAbiolinks Normalization MethylationArrayData
13 months ago • updated 12 months ago Giovanni Calice ▴ 160
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Normalization in methylation analysis
Methylation minfi preprocessQuantile MethylationArrayData preprocessFunnorm
15 months ago kyj2226 • 0
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6
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1.4k
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Methylation data analysis
MethylationArrayData methylationArrayAnalysis
17 months ago aldea85 • 0
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3
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1.1k
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Merging Methylation data (M-values) with phenotypic data
MethylationArrayData methylationArrayAnalysis
updated 19 months ago by 68k • written 20 months ago by • 0
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865
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
20 months ago Arianna • 0
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2
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1.2k
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How to perform a methylation analyisis from m values
MethylationArrayData methylationArrayAnalysis
22 months ago Irene • 0
1
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1
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877
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urgent error for producing table of topGO() annotated DMPs methylation
methylationArrayAnalysis topGO missMethyl MethylationArrayData MethylationArray
updated 23 months ago by ▴ 40 • written 23 months ago by • 0
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6
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1.6k
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cpg.annotate() in DMRcate error
DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray
updated 23 months ago by ▴ 230 • written 23 months ago by • 0
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887
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LmFit error in EPIC methylation array analysis, Minfi
methylationArrayAnalysis minfi MethylationArrayData minfiDataEPIC MethylationArray
updated 2.0 years ago by 52k • written 2.0 years ago by • 0
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4
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1.6k
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Sex estimation problems in [estimateCellCounts]: methylation arrays
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
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5
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2.0k
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minfi error read.metharray.exp
methylationArrayAnalysis minfiData minfi MethylationArrayData MethylationArray
written 2.1 years ago by • 0
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2
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2.2k
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ChAMP package:Error in cmdscale(d) : 'k' must be in {1, 2, .. n - 1}
MethylationArrayData
2.5 years ago • updated 2.4 years ago shuangshuang • 0
2
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2
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1.7k
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Limma vs. lm for methylation data
limma MethylationArrayData MethylationArray
3.0 years ago fluentin44 • 0
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0
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976
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filtering options in RnBeads for array data
Epigenetics RnBeads MethylationArrayData methylationArrayAnalysis
3.0 years ago Jitendra ▴ 10
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1.1k
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Problem loading Red channel idat files with champ.load
R MethylationArrayData ChAMP
3.4 years ago Paulina • 0
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1.1k
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DNA methylation EPIC array and ChromHMM
chromhmmData MethylationArrayData
3.6 years ago macsue.jacques ▴ 10
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1.1k
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minfi - estimateCellCounts2-proportions sum more than 1
minfi minfiData MethylationArrayData
3.7 years ago ponche_de_kiwi • 0
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6
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4.4k
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Merge problems in R
methylationArrayAnalysis ChAMP MethylationArrayData
3.7 years ago FWNL15 • 0
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1
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1.1k
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Error in reading metharray sheet
DifferentialMethylation MethylationArrayData
updated 3.8 years ago by ▴ 780 • written 3.8 years ago by • 0
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0
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1.4k
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How to get illumina CpG IDs by gene name?
MethylationArrayData RnBeads
4.1 years ago D ▴ 10
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4
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3.6k
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Unable to read in the IDAT files using read.metharray.exp()
MethylationArrayData methy Bioconductor minfi
4.1 years ago shweta • 0
1
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1
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3.0k
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DMR Plot
dmr MethylationArrayData DMRcatedata
updated 4.4 years ago by 68k • written 4.4 years ago by • 0
28 results • Page 1 of 1
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Comment: BiocParallel_1.40.1.tar.gz not available by Johan • 0
It worked. Thanks :)
Comment: Model performance for spline modelling of RNA-seq timecourses in edgeR by skiaphrene ▴ 10
Dear Gordon, Thank you very much for your prompt reply. I agree with the limma/edgeR perspective of including all potentially explanatory…
Comment: how to use `arrayWeightsQuick()`? by Gordon Smyth 52k
What sort of object is `expression`? Does it contain any missing values?
Answer: Deleted:No significant MVPs with a BH adjusted P-value below 0.05 by shocked.tick.zyet • 0
Dealing with those adjusted p-values in ChAMP can feel like a frustrating game of [Uno Online](https://unoonlinefree.com) , especially when…
Comment: DESeq2 lfcShrink drastic shrinkage by Nick • 0
Did you ever figure out the cause of this? I am seeing very similar results and wondering if you have advice on how you may have resolved t…
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Answer: BiocParallel_1.40.1.tar.gz not available
Modelling gene program dynamics across time with {lemur}
A: DESeq2 one group vs multiple groups comparison in presence of batch effect
Comment: BiocParallel_1.40.1.tar.gz not available
Comment: BiocParallel_1.40.1.tar.gz not available
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