Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
MSA
•
reset
0
votes
2
replies
2.1k
views
Error in msaFun Cannot open input file. No alignment!
msa
written 10 months ago by
Kamil Slowikowski
▴ 30
0
votes
1
reply
634
views
Cant post a bug report
msa
updated 12 months ago by
alexandre.blais
▴ 50 • written 17 months ago by
Torbjørn
• 0
0
votes
0
replies
475
views
msa package Error in .local(x, ...) : consensus matrix 'x' is not in proper format
msa
18 months ago
Yang
• 0
0
votes
2
replies
832
views
msa Installation failed - please help
Install
msa
20 months ago
Ido
• 0
1
vote
7
replies
3.9k
views
MSA package fails to be installed - installation of package ‘msa’ had non-zero exit status
msa
MultipleSequenceAlignment
updated 22 months ago by
stitam
• 0 • written 3.9 years ago by
thanos_docp
• 0
0
votes
0
replies
505
views
msa module crash
msa
2.0 years ago
systems
• 0
0
votes
0
replies
740
views
adding peptides to a multiple sequence alignment
msa
IRanges
Biostrings
2.0 years ago
Mario Dejung
• 0
0
votes
7
replies
3.6k
views
msa: object 'msaClustalW' of mode 'function' was not found
msa
updated 2.1 years ago by
UBod
▴ 300 • written 4.4 years ago by
richel
• 0
0
votes
1
reply
1.0k
views
Error installing package msa on macOS Monterey 12.6 arm64
msa
arm64
2.3 years ago
lisa.a.ouellette
• 0
0
votes
0
replies
945
views
Edit alignment in msa
alig
msa
Alignment
2.3 years ago
Luis
• 0
0
votes
1
reply
1.4k
views
Difficulty with msaConvert function in R package
ape
msa
updated 2.8 years ago by
UBod
▴ 300 • written 3.2 years ago by
João Tadeu
• 0
1
vote
1
reply
1.7k
views
Msa package clustal-omega
msa
updated 3.1 years ago by
Gerhard Thallinger
▴ 180 • written 3.1 years ago by
Radwa
• 0
0
votes
0
replies
808
views
Can I quantify the number of mismatches post alignment?
msa
3.2 years ago
Field -Ye
• 0
8
votes
8
replies
3.1k
views
msa compilation failure - multiple definition of `GC_jmp_buf' in gc-7.2
software error
msa
updated 3.3 years ago by
UBod
▴ 300 • written 4.6 years ago by
Freddie
▴ 40
0
votes
1
reply
1.4k
views
msaprettyprint
msa
prettyprint
updated 3.7 years ago by
UBod
▴ 300 • written 3.7 years ago by
SB775
• 0
2
votes
3
replies
3.3k
views
msaprettyprint error in R
msa
updated 4.1 years ago by
UBod
▴ 300 • written 4.4 years ago by
liripo
• 0
0
votes
0
replies
673
views
[Function Request]converts a AA-based fasta alignment (that includes aa fasta sequences of different strains) into a vcf file
msa
4.2 years ago
yeli7068
• 0
0
votes
3
replies
2.1k
views
DECIPHER save alignement in outputs
msa
decipher
output
prettyPrint
updated 4.4 years ago by
UBod
▴ 300 • written 4.4 years ago by
matamunee
• 0
0
votes
0
replies
954
views
msa: cannot load library silently
msa
4.4 years ago
richel
• 0
0
votes
3
replies
1.6k
views
Align a list of DNA sequence, extract only positions with SNPs for conpact view?
msa
Biostrings
updated 4.8 years ago by
UBod
▴ 300 • written 4.8 years ago by
Vang Le
▴ 80
1
vote
1
reply
1.5k
views
Error using r msa::msaClustalW in parallel
software error
msa
updated 5.0 years ago by
UBod
▴ 300 • written 5.0 years ago by
vladimirbcs
▴ 10
0
votes
1
reply
2.8k
views
Seeking help deploying Shiny application to RStudio Connect with Bioconductor package
Rstudio Connect
msa
bios2mds
BiocManager
Bioconductor
5.6 years ago
morlenrp
• 0
0
votes
1
reply
1.3k
views
Can any of the existing `MSA` packages be used/adapted to visualize a pre-aligned fasta or tsv file (e.g., `kalign` output)?
msa
phylogeny
updated 5.7 years ago by
ulrich.bodenhofer
▴ 20 • written 5.7 years ago by
jananiravi
• 0
1
vote
2
replies
1.4k
views
What is the '?' in the result of R package 'msa' function 'msa'?
MSA
R
Multiple sequence alignment
consensus sequence
updated 5.7 years ago by
ulrich.bodenhofer
▴ 20 • written 5.7 years ago by
Yuchen Chang
• 0
0
votes
9
replies
2.3k
views
visualizing alignment without realignment
msa
alignment
visualization
updated 5.9 years ago by
Martin Morgan
25k • written 5.9 years ago by
tim.ivanov.92
• 0
1
vote
2
replies
1.5k
views
Package for custom visualization of multiple sequence alignment
MSA
visualization
updated 6.3 years ago by
ulrich.bodenhofer
▴ 20 • written 6.3 years ago by
tim.ivanov.92
• 0
0
votes
4
replies
1.5k
views
Error: could not find function "msaConvert"
msa
updated 6.6 years ago by
UBod
▴ 300 • written 6.6 years ago by
singh24s
• 0
0
votes
1
reply
1.1k
views
Defining populations in a msaClustalOmega alignment
msa
6.6 years ago
cav3gh
• 0
2
votes
2
replies
4.1k
views
How to get msa output in fasta format
msa
msaprettyprint()
updated 6.7 years ago by
UBod
▴ 300 • written 6.7 years ago by
cav3gh
• 0
2
votes
2
replies
1.4k
views
seqfault wiht msa
msa
segfault
6.7 years ago
jmh5ad
▴ 40
0
votes
1
reply
1.7k
views
Status 1 error when using msaPrettyPrint() to make pdfs with MsaAAMultipleAlignment
msaprettyprint()
latex
pdf
msa
updated 7.0 years ago by
UBod
▴ 300 • written 7.0 years ago by
Cecil
• 0
0
votes
1
reply
1.6k
views
Error in .Primitive("c")(<S4 object of class "IRanges">) : could not find symbol "recursive" in environment of the generic function running msa
msa
iranges
updated 7.0 years ago by
UBod
▴ 300 • written 7.0 years ago by
mtorresp1975
• 0
2
votes
11
replies
6.3k
views
How do I extract the complete MsaAAMultipleAlignment object to a file
msaprettyprint()
msa
multiplealignment
export
updated 7.0 years ago by
UBod
▴ 300 • written 7.0 years ago by
Assa Yeroslaviz
★ 1.5k
2
votes
4
replies
2.5k
views
running msa (msa) aborts R session
msa
alignment
r
software error
written 7.1 years ago by
ans74
• 0
3
votes
2
replies
2.3k
views
Installation of MSA package fails
MSA
package installation
software error
compilation error
updated 7.1 years ago by
UBod
▴ 300 • written 7.1 years ago by
sean.pikosz
▴ 10
2
votes
2
replies
2.9k
views
msa: How to obtain a subset of an alignment
msa
Biostrings
MultipleAlignment
updated 7.4 years ago by
UBod
▴ 300 • written 7.4 years ago by
Christof Winter
▴ 10
4
votes
5
replies
2.1k
views
Can't install msa on FreeBSD
software error
FreeBSD
msa
7.4 years ago
spcohen2
▴ 20
1
vote
2
replies
1.5k
views
untranslate AAstringset {Biostrings} or MsaAAMultipleAlignment {msa}
biostrings
msa
7.5 years ago
multipleseqs
• 0
8
votes
14
replies
12k
views
Using msa msaPrettyPrint(): saving multiple alignement fasta file
msa
msaprettyprint()
fasta
updated 7.7 years ago by
tongtong.wang1210
• 0 • written 8.0 years ago by
Olorin
▴ 50
2
votes
5
replies
2.2k
views
Multiple Sequence Alignment using DNA sequence
msa
decipher
7.7 years ago
bbista91
▴ 10
2
votes
2
replies
2.2k
views
Error with MSA package - could not find symbol "recursive"
msa
updated 7.9 years ago by
Martin Morgan
25k • written 7.9 years ago by
cmdcolin
▴ 10
2
votes
1
reply
1.6k
views
Outputting a multiple alignment to file error: could not find function write.XStringSet
msa
updated 7.9 years ago by
UBod
▴ 300 • written 7.9 years ago by
cmdcolin
▴ 10
1
vote
2
replies
1.5k
views
msaPrettyPrint cannot handle long sequences?
msa
msaprettyprint()
multiple sequence alignment
7.9 years ago
map2085
▴ 40
9
votes
14
replies
3.9k
views
msa package installation problem
msa
updated 7.9 years ago by
Nam
▴ 10 • written 8.1 years ago by
branislav misovic
▴ 120
2
votes
9
replies
3.9k
views
msa alignement: sorted sequences by sequence name
msa
alignement
output
sorted
8.0 years ago
Olorin
▴ 50
1
vote
1
reply
5.2k
views
Using msa msaPrettyPrint(): issues with latex
msa
latex
msaPrettyPrint()
8.0 years ago
Olorin
▴ 50
0
votes
0
replies
1.4k
views
Using readAAMultipleAlignment to parse CMFinder Stockholm format alignments
biostrings
stockholm
msa
cmfinder
8.1 years ago
Keith Hughitt
▴ 180
0
votes
1
reply
1.2k
views
How to draw phylogeny tree for long genomes? ('msa' taking much time)
msa
phylogenetic
updated 8.1 years ago by
UBod
▴ 300 • written 8.1 years ago by
vinod.acear
▴ 50
0
votes
1
reply
1.9k
views
Error: could not find function "msaConvert"
msa
software error
updated 8.3 years ago by
UBod
▴ 300 • written 8.3 years ago by
weiguo0113
• 0
0
votes
3
replies
1.8k
views
installation failed when trying msa
msa
updated 8.3 years ago by
UBod
▴ 300 • written 8.3 years ago by
akp
• 0
50 results • Page
1 of 1
Recent ...
Replies
Answer: Postdoc/RA position: Software Engineer For R and High-Performance Computing
by
delhirussianescortscom
• 0
Our escorts are well-groomed and well-trained to give you ultimate seduction and deep pleasure. If you're looking for hot Delhi air hostess…
Answer: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio
by
Robert Castelo
★ 3.4k
Following the discussion of this post, the package [gDNAx](https://bioconductor.org/packages/gDNAx) has been fixed in devel and release 1.4…
Answer: Selection of correct coefficients or contrasts in DESeq2
by
James W. MacDonald
67k
Using R's model formulation for three-way interactions is probably not the way to go here. Or at least I wouldn't do it that way. An easier…
Comment: How to generate circular cnetplot and color nodes and edges in the same plot ?
by
Blandine
• 0
Thank you so much ! It's working !
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
by
James W. MacDonald
67k
Yes. If you have the Illumina IDs, then all the annotation data that `cpg.annotate` uses will be based on hg19. It doesn't matter if TCGA l…
Votes
A: DESeq2 interaction term
Comment: Recount3 data correspond to TCGA data
Answer: DESeq2- merging technical vs biological replicates
Answer: SingleCellExperiment convenience function for metadata+expression?
How to correct for tumor purity using DESeq2 to analyze TCGA tumor sample expression.
Awards
• All
Popular Question
to
Gordon Smyth
52k
Popular Question
to
ajglajd gajgflkadfj gl
• 0
Popular Question
to
Robert Castelo
★ 3.4k
Popular Question
to
Robert Ivanek
▴ 750
Popular Question
to
shepherl
4.1k
Locations
• All
The city by the bay,
5 hours ago
United States,
5 hours ago
United States,
6 hours ago
India,
7 hours ago
WEHI, Melbourne, Australia,
9 hours ago
Traffic: 497 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6