Showing : GeneExpression • reset
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Using Affymetrix Custom Array
ArrayExpress makecdfenv AffymetrixChip gcrma GeneExpression
updated 2 days ago by 67k • written 2 days ago by • 0
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1
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166
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Is my time course analysis with DESeq2 valid?
GeneExpression DESeq2 TimeCourse
updated 6 days ago by 42k • written 7 days ago by • 0
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9
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730
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Can DESeq2 rlog normalized matrix reflects time course result directly?
DESeq2 timecoursedata GeneExpression
updated 6 months ago by ★ 4.5k • written 6 months ago by • 0
2
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3
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710
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"could not find function "readTSGE" in package ctsGE" Error occurs when trying to follow ctsGE package instructions.
GeneExpression Clustering ctsGE
8 months ago jbgnielson • 0
2
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2
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671
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DESeq2: Comparison of single clinical sample to 4 normals using tumour cohort to infer dispersion of single sample
GeneExpression DESeq2 RNASeqData RNASeq StatisticalMethod
12 months ago Manthos • 0
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3
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3.2k
views
TPM from STAR mapped counts
GeneExpression GenomicFeatures RNA-Seq TPM
updated 14 months ago by 51k • written 14 months ago by • 0
0
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1
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716
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Read methylation data from tar files on GEO (GSE73303)
GeneExpression Bioconductor GEOquery MethylationArrayData
16 months ago Arianna • 0
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2
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2.6k
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FeatureCounts Output Counts at Exon Level Using Default Settings, want gene level
GeneExpression
19 months ago CDSPARKS ▴ 10
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1
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857
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Heatmap of two conditions from the normalized gene count data
GeneExpression heatmaps
updated 20 months ago by ★ 4.5k • written 20 months ago by • 0
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1
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3.5k
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DESeq2 after Seurat analysis on integrated datasets
DESeq2 SingleCell GeneExpression Seurat
updated 21 months ago by ★ 4.5k • written 21 months ago by • 0
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4
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2.1k
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Comparing different method for DESEQ2
DESeq2 GeneExpression
updated 2.1 years ago by 42k • written 2.2 years ago by • 0
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3
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1.3k
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CountOverlap
GeneExpression ChIPSeqData
updated 2.2 years ago by 67k • written 2.2 years ago by ▴ 20
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0
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575
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Free Gibbson energy RNA doublex
GeneExpression RNAinteract
2.3 years ago Tamina • 0
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0
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750
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Error while running Case study n. 3: Integration of methylation and expression for ACC
geneexpression methylation
2.4 years ago hlee ▴ 10
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2
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1.1k
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Seeking help in multifactor differential gene expression analysis using DESeq2. Can not get significance difference while comparing 3 time factor (…
DifferentialExpression GeneExpression R enrichment DEGseq
updated 2.4 years ago by ★ 1.4k • written 2.4 years ago by • 0
0
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1
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709
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Error "DESeqDataSetFromMatrix" function not found
GeneExpression
updated 2.4 years ago by ▴ 780 • written 2.4 years ago by • 0
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1
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817
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Aggregate differentially expressed genes across all contrast results using DEVis
DifferentialExpression NanoporeRNASeq DESeq2 GeneExpression DEVis
updated 2.5 years ago by 67k • written 2.5 years ago by • 0
1
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1
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965
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Error while using champ.SVD function
GeneExpression
updated 2.6 years ago by ▴ 780 • written 2.6 years ago by • 0
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1
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2.1k
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GDCprepare of STAR - counts
GeneExpression TCGAbiolinks
updated 2.2 years ago by • 0 • written 2.6 years ago by • 0
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0
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1.0k
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Volcano plot: Putting calculated values in legend
GeneExpression
updated 2.6 years ago by ★ 4.0k • written 2.6 years ago by • 0
2
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2
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997
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Could use some advice on analyzing ranks of expressed genes in two conditions,
GeneExpression DESeq2 ExpressionData
updated 2.7 years ago by • 0 • written 2.7 years ago by ▴ 10
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2
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2.4k
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Using DESeq2 for Differential Expression Analysis with Interaction Term
DifferentialExpression GeneExpression DESeq2 Design()
3.1 years ago p.l.chen • 0
2
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2
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7.6k
views
Deseq2 and log2foldchange cutoffs- How to get differentially expressed genes?
DifferentialExpression GeneExpression DESeq2 R
updated 3.1 years ago by ★ 4.5k • written 3.1 years ago by ▴ 10
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2
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1.2k
views
Gene expression in R
limma edgeR Biobase GeneExpression
3.2 years ago sogol.bouyeh • 0
2
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2
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2.0k
views
DESeq2 - one groups with no replicates
DESeq2 rnaseqGene DifferentialExpression GeneExpression
3.4 years ago SUMIT • 0
5
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18
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3.4k
views
DESeq2 comparison two cell types and two genotypes
GeneExpressionWorkflow DESeq2 GeneExpression
updated 3.5 years ago by 42k • written 3.6 years ago by • 0
1
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3
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1.2k
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DESeq analysis with Biological replicate.
DESeq2 ExpressionData GeneExpression
updated 3.8 years ago by 42k • written 3.8 years ago by • 0
1
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1
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838
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Accounting for fish body mass in DE?
GeneExpression edgeR
updated 3.9 years ago by 67k • written 3.9 years ago by • 0
0
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1
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856
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Find significant genes related to a specific disease
GeneExpression RNASeqR limma
updated 4.0 years ago by ▴ 510 • written 4.0 years ago by • 0
1
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3
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1.2k
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Troubles implementing LIMMA for paired samples (before/after treatment) comparaisons
GeneExpression R limma MultipleComparison
updated 4.0 years ago by 67k • written 4.0 years ago by • 0
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0
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735
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Diffrential Gene expression in a group of specific methylated prometor patience
GeneExpression methyAnalysis MethylationArray
4.0 years ago coobzie • 0
2
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5
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13k
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Calculating FPKM from raw counts data using fpkm() in deseq2
deseq2 r fpkm() geneexpression
updated 6.1 years ago by 42k • written 6.1 years ago by ▴ 60
1
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4
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2.3k
views
Need help loading gene expression data into R using either ArrayExpress or GEOquery R packages
arrayexpress geoquery geneexpression
updated 6.6 years ago by 21k • written 6.6 years ago by ▴ 10
3
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1
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2.0k
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Processing several GSM from GEO database using Barcode and fRMA
frma barcode geneexpression gsm ncbi geo
updated 7.0 years ago by ▴ 830 • written 7.0 years ago by • 0
1
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4
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2.0k
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ddCT Package for StepOnePlus qPCR output
qPCR ddCt geneexpression
updated 7.3 years ago by ▴ 120 • written 7.3 years ago by ▴ 60
1
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3
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1.4k
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General suggestions regarding gene expression
geneexpression
updated 7.8 years ago by 51k • written 7.8 years ago by • 0
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0
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1.1k
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Where or how to find the gene interaction with itself?
microarray gene interaction geneexpression
7.9 years ago shaheryar • 0
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0
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1.3k
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Error in SAMseq analysis with R
r samseq microarray rnaseq geneexpression
8.2 years ago namilio • 0
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0
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1.3k
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Methylation and gene expression
methylation geneexpression
8.3 years ago Asma rabe ▴ 290
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2
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1.2k
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Methylation and gene expression data
methylation geneexpression
updated 8.5 years ago by ▴ 130 • written 8.5 years ago by ▴ 290
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3
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1.7k
views
error in drawing MDS plot for eset
MDSplot geneexpression insilicomerging
updated 8.7 years ago by 67k • written 8.7 years ago by ▴ 20
1
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6
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2.0k
views
how to deal the effect of enormous gene expression?
deseq2 rnaseq tomato geneexpression
updated 8.7 years ago by 42k • written 8.7 years ago by • 0
0
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1
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1.4k
views
Error in MetaQC R package.
r metaqc microarray geneexpression
8.9 years ago Agaz Hussain Wani ▴ 260
0
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3
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2.1k
views
problem with WGCNA
geneexpression
updated 9.0 years ago by ★ 3.0k • written 9.0 years ago by • 0
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5
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1.9k
views
heatmap in R
r language microarray geneexpression
updated 9.2 years ago by ★ 1.0k • written 9.2 years ago by • 0
1
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1
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1.3k
views
gene expression data analysis
microarray geneexpression
updated 9.2 years ago by 67k • written 9.2 years ago by • 0
1
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1
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5.3k
views
NA p and p adjusted value
geneexpression
updated 9.3 years ago by ★ 3.0k • written 9.3 years ago by • 0
1
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2
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6.3k
views
explanation of makeContrasts function of limma package
limma microarray R geneexpression
updated 9.3 years ago by ★ 28k • written 9.3 years ago by ▴ 10
0
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3
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12k
views
How to combine expression values of multiple probes for one gene
probe convert geneexpression onechannelgui
updated 9.3 years ago by ▴ 830 • written 9.4 years ago by ▴ 10
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0
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1.2k
views
Using segAnglePo() for a set of genes
geneexpression genesetenrichment segAnglePo
9.9 years ago Peter.Wood • 0
50 results • Page 1 of 1
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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