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DNAMethylation
•
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0
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7
replies
352
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Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
29 days ago • updated 23 days ago
hortense96
• 0
0
votes
6
replies
361
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 5 weeks ago by
Tim Peters
▴ 180 • written 6 weeks ago by
s.malik
• 0
0
votes
0
replies
104
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
6 weeks ago
Macsue
• 0
0
votes
1
reply
189
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
updated 8 weeks ago by
Simon Pearce
• 0 • written 3 months ago by
User3088
• 0
0
votes
1
reply
280
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
updated 10 weeks ago by
belinda.phipson
▴ 40 • written 10 weeks ago by
s.malik
• 0
3
votes
5
replies
2.2k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 12 weeks ago by
sup0903
• 0 • written 3.4 years ago by
Hongbii
• 0
0
votes
4
replies
473
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 12 weeks ago by
James W. MacDonald
65k • written 12 weeks ago by
rae.alshammari
▴ 10
1
vote
4
replies
437
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 3 months ago by
Gordon Smyth
50k • written 3 months ago by
Jitendra
▴ 10
1
vote
4
replies
501
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
3 months ago
mikat
• 0
0
votes
1
reply
514
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
12 months ago
Grace
• 0
2
votes
6
replies
1.1k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 12 months ago by
Tim Peters
▴ 180 • written 12 months ago by
Grace
• 0
2
votes
6
replies
980
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 14 months ago by
belinda.phipson
▴ 40 • written 14 months ago by
Joana
• 0
0
votes
0
replies
550
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
21 months ago
calen.p.ryan
• 0
3
votes
8
replies
1.4k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
2.9 years ago
rtrivedi1
▴ 10
14 results • Page
1 of 1
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Replies
Comment: Ensembl plants at annotationHub?
by
Johannes Rainer
★ 2.0k
Dear Daniele, for which Ensembl release would you need the data? the most recent is 112, but if you used a different version before it wou…
Comment: Ensembl plants at annotationHub?
by
Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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