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QSEA
•
reset
0
votes
0
replies
41
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
3 days ago
Researcher
• 0
0
votes
1
reply
189
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
updated 8 weeks ago by
Simon Pearce
• 0 • written 3 months ago by
User3088
• 0
7
votes
18
replies
3.0k
views
Generation of QSEA TCGA 450K Human Methylation Calibration Dataset
illimina 450k methylation
qsea
MEDIPS
TCGA
updated 4 months ago by
Matthias Lienhard
▴ 240 • written 7.1 years ago by
justinburgener
▴ 20
2
votes
1
reply
513
views
QSEA: normalisation >> sequencing preference
qsea
updated 15 months ago by
Matthias Lienhard
▴ 240 • written 15 months ago by
a.riediger
▴ 20
1
vote
1
reply
638
views
Manual import of CNV data (created with IchorCNA) into QSEAsest wit addCNV()
ichorCNA
qsea
updated 15 months ago by
Matthias Lienhard
▴ 240 • written 15 months ago by
a.riediger
▴ 20
1
vote
4
replies
1.1k
views
QSEA: choose appropriate reference for TMM normalisation with qsea::addLibraryFactors / qsea::estimateLibraryFactors
TMM
edgeR
qsea
MEDIPS
updated 20 months ago by
Simon Pearce
• 0 • written 20 months ago by
a.riediger
▴ 20
0
votes
2
replies
843
views
MBD-seq non model species
MethylSeq
ramwas
MEDIPS
qsea
updated 21 months ago by
Simon Pearce
• 0 • written 21 months ago by
Marianna
▴ 20
3
votes
8
replies
1.4k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
2.9 years ago
rtrivedi1
▴ 10
7
votes
9
replies
1.7k
views
QSEA : Internal CNV analysis and cancer type-specific TCGA 450K Human Methylation Calibration Dataset
MEDIP-seq
CNV
TCGA450KHumanMethylationCalibrationDataset
qsea
PRAD
3.0 years ago
rtrivedi1
▴ 10
0
votes
1
reply
650
views
No beta scores generated in samples eluted at low salt concentration (MBD-seq) which aims to capture low methylated fragments?
qsea
updated 3.0 years ago by
Matthias Lienhard
▴ 240 • written 3.2 years ago by
el466
• 0
0
votes
1
reply
859
views
addPatternDensity in 'qsea' takes too much time
MBD-seq
qsea
BiocParallel
updated 3.4 years ago by
Matthias Lienhard
▴ 240 • written 3.4 years ago by
mbk0asis
• 0
0
votes
2
replies
777
views
Qsea - plotCoverage
Qsea
updated 4.1 years ago by
Matthias Lienhard
▴ 240 • written 4.1 years ago by
gaurav4thareja
▴ 20
1
vote
2
replies
976
views
Read counts between QSEA and MEDIPs
qsea
medips
updated 4.2 years ago by
Matthias Lienhard
▴ 240 • written 4.2 years ago by
Simon Pearce
• 0
0
votes
1
reply
687
views
Qsea - addEnrichmentParameters() - Using INPUT Samples
Qsea
updated 4.2 years ago by
Matthias Lienhard
▴ 240 • written 4.2 years ago by
gaurav4thareja
▴ 20
0
votes
2
replies
1.1k
views
MBDseq analysis using qsea package
qsea
MBDseq
updated 4.7 years ago by
Matthias Lienhard
▴ 240 • written 4.7 years ago by
LNathanson
• 0
0
votes
0
replies
999
views
Indexing large chromosomes (like wheat) bam files in Rsamtools
Rsamtools
QSEA
MEDIPS
5.6 years ago
saripalligautam86
▴ 10
0
votes
1
reply
872
views
Error running the addCoverage command in QSEA with a custom BSGenome reference
qsea
updated 5.9 years ago by
Matthias Lienhard
▴ 240 • written 6.0 years ago by
apt.university
• 0
0
votes
8
replies
1.6k
views
qsea non-TCGA 450K Human Methylation Calibration Dataset
qsea
updated 6.0 years ago by
Matthias Lienhard
▴ 240 • written 6.0 years ago by
wildist
• 0
0
votes
3
replies
1.2k
views
QSEA: Need help on creating ROI for whole genome MeDIPSeq data
qsea
updated 6.2 years ago by
Matthias Lienhard
▴ 240 • written 6.2 years ago by
geekyvt
• 0
1
vote
2
replies
1.0k
views
QSEA: Error while addLibraryFactors
QSEA
updated 6.2 years ago by
Matthias Lienhard
▴ 240 • written 6.2 years ago by
geekyvt
• 0
1
vote
3
replies
1.3k
views
QSEA Error while loading the bam files
qsea
updated 6.2 years ago by
Matthias Lienhard
▴ 240 • written 6.2 years ago by
geekyvt
• 0
21 results • Page
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Daniele
• 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
by
BioinfGuru
▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
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makala
• 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set
by
Erik Wright
▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
by
Matthew Thornton
▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
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