Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
DNAMethylation
•
reset
1
vote
2
replies
493
views
normalizatino of dna methylation EPIC data
DNA
minfiData
minfiDataEPIC
DNAMethylation
minfi
11 days ago
user_bioinfo
• 0
0
votes
0
replies
91
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
4 weeks ago
User3088
• 0
0
votes
0
replies
370
views
Job:
Postdoctoral Research Associate in Computational Epigenomics
Phd
SingleCell
DNAMethylation
Shanghai
JobPosting
5 months ago
xiaolong
• 0
0
votes
7
replies
1.7k
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
10 months ago
hortense96
• 0
0
votes
0
replies
429
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
11 months ago
Macsue
• 0
1
vote
6
replies
1.1k
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 10 months ago by
Tim Peters
▴ 230 • written 11 months ago by
s.malik
• 0
1
vote
3
replies
1.7k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
12 months ago • updated 5 months ago
s.malik
• 0
0
votes
4
replies
1.7k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
rae.alshammari
▴ 10
1
vote
4
replies
1.1k
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 12 months ago by
Gordon Smyth
52k • written 13 months ago by
Jitendra
▴ 10
0
votes
2
replies
524
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
13 months ago • updated 4 weeks ago
User3088
• 0
1
vote
4
replies
1.2k
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
13 months ago
mikat
• 0
0
votes
1
reply
758
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
22 months ago
Grace
• 0
2
votes
6
replies
1.6k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 22 months ago by
Tim Peters
▴ 230 • written 22 months ago by
Grace
• 0
2
votes
6
replies
1.4k
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 24 months ago by
belinda.phipson
▴ 40 • written 24 months ago by
Joana
• 0
0
votes
0
replies
803
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
2.6 years ago
calen.p.ryan
• 0
3
votes
8
replies
1.8k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
3.7 years ago
rtrivedi1
▴ 10
3
votes
5
replies
2.9k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 12 months ago by
sup0903
• 0 • written 4.2 years ago by
Hongbii
• 0
17 results • Page
1 of 1
Recent ...
Replies
Comment: how many significant figures are there in DESeq2 output
by
ATpoint
★ 4.7k
If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…
Comment: Compare TCGA-PAAD with GTEx gene expression
by
Jane
• 0
why aren't there any answers?
Comment: Too many significant genes when integrating gtex and tcga
by
Jane
• 0
I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…
Comment: how many significant figures are there in DESeq2 output
by
Matthew McCormack
▴ 180
Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…
Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to
by
ATpoint
★ 4.7k
No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…
Votes
A: Unbalanced experiment with multiple samples from each patient.
Unbalanced experiment with multiple samples from each patient.
Answer: Vertical line at A=0, nothing else, on MA plot
Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct
Answer: Group-specific condition effects with individuals nested: matrix is not full ra
Awards
• All
Popular Question
to
svlachavas
▴ 840
Popular Question
to
Matthew McCormack
▴ 180
Popular Question
to
James W. MacDonald
68k
Popular Question
to
shepherl
4.1k
Popular Question
to
Marco
• 0
Locations
• All
United States,
39 minutes ago
United Kingdom,
49 minutes ago
San Diego,
53 minutes ago
UPF, Barcelona, Spain,
1 hour ago
United States,
2 hours ago
Traffic: 1230 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6