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DNAMethylation
•
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0
votes
0
replies
27
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Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
1 day ago
User3088
• 0
0
votes
0
replies
337
views
Job:
Postdoctoral Research Associate in Computational Epigenomics
Phd
SingleCell
DNAMethylation
Shanghai
JobPosting
4 months ago
xiaolong
• 0
0
votes
7
replies
1.5k
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
9 months ago
hortense96
• 0
0
votes
0
replies
388
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
10 months ago
Macsue
• 0
1
vote
6
replies
1.1k
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 9 months ago by
Tim Peters
▴ 200 • written 10 months ago by
s.malik
• 0
1
vote
3
replies
1.6k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
11 months ago • updated 4 months ago
s.malik
• 0
0
votes
4
replies
1.5k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 11 months ago by
James W. MacDonald
67k • written 11 months ago by
rae.alshammari
▴ 10
1
vote
4
replies
1.0k
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 11 months ago by
Gordon Smyth
52k • written 12 months ago by
Jitendra
▴ 10
0
votes
2
replies
468
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
12 months ago • updated 1 day ago
User3088
• 0
1
vote
4
replies
1.1k
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
12 months ago
mikat
• 0
0
votes
1
reply
725
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
21 months ago
Grace
• 0
2
votes
6
replies
1.5k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 21 months ago by
Tim Peters
▴ 200 • written 21 months ago by
Grace
• 0
2
votes
6
replies
1.3k
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 23 months ago by
belinda.phipson
▴ 40 • written 23 months ago by
Joana
• 0
0
votes
0
replies
761
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
2.5 years ago
calen.p.ryan
• 0
3
votes
8
replies
1.8k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
3.6 years ago
rtrivedi1
▴ 10
3
votes
5
replies
2.8k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 11 months ago by
sup0903
• 0 • written 4.1 years ago by
Hongbii
• 0
16 results • Page
1 of 1
Recent ...
Replies
Comment: Unused arguments error without used arguments in GSVA?
by
1sunmic2
• 0
It was due to the comma. Thank you!
Answer: Unused arguments error without used arguments in GSVA?
by
Axel Klenk
★ 1.1k
Hi, here is a good place to ask questions when encountering problems with GSVA. I cannot reproduce this behaviour with the current release…
Answer: Restricting differential binding analysis to only TSS-proximal regions
by
Aaron Lun
★ 28k
Seems reasonable to filter out windows outside of the TSS if you don't care about those events. IIRC the `discard` option will ignore any f…
Comment: Sample-specific methylation values using QSEA
by
User3088
• 0
Thanks Simon. I got the sample-specific methylation values by using '**samples=getSampleNames**' ``` result=makeTable(qs=prad_QSEAset, glm=…
Comment: input for singR function
by
iamin053
• 0
Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!
Votes
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Answer: Unused arguments error without used arguments in GSVA?
Unused arguments error without used arguments in GSVA?
Answer: Is it always preferable to recount library sizes of DGEList object in edgeR afte
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shepherl
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bastien_chassagnol
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Maria Doyle
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