Bioconductor DNAMethylation

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DNA minfiData minfiDataEPIC DNAMethylation minfi

11 days ago user_bioinfo • 0

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qsea MEDIPS MEDIPSData DNAMethylation

4 weeks ago User3088 • 0

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370

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Phd SingleCell DNAMethylation Shanghai JobPosting

5 months ago xiaolong • 0

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DNAMethylation limma methylationArrayAnalysis

10 months ago hortense96 • 0

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DNAMethylation DMRcate

11 months ago Macsue • 0

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DNAMethylation AnnotationHub EPICv2manifest annotation

updated 10 months ago by Tim Peters ▴ 230 • written 11 months ago by s.malik • 0

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DNAMethylation GO MethylationArray missMethyl EPICv2

12 months ago • updated 5 months ago s.malik • 0

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DNAMethylation EPICv2 IlluminaHumanMethylationEPICmanifest

updated 12 months ago by James W. MacDonald 68k • written 12 months ago by rae.alshammari ▴ 10

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DNAMethylation limmaGUI biostatistics limma

updated 12 months ago by Gordon Smyth 52k • written 13 months ago by Jitendra ▴ 10

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524

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DNAMethylation cfMeDIP-seq cfDNA qsea

13 months ago • updated 4 weeks ago User3088 • 0

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DNAMethylation MethylationArray methylationArrayAnalysis illumina

13 months ago mikat • 0

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DNAMethylation missMethyl Pathways

22 months ago Grace • 0

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1.6k

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DNAMethylation methylationArrayAnalysis DMRcate MethylationArrayData MethylationArray

updated 22 months ago by Tim Peters ▴ 230 • written 22 months ago by Grace • 0

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DNAMethylation missMethyl

updated 24 months ago by belinda.phipson ▴ 40 • written 24 months ago by Joana • 0

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DNAMethylation wateRmelon Computation minfi

2.6 years ago calen.p.ryan • 0

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DNAMethylation QSEA MEDIP

3.7 years ago rtrivedi1 ▴ 10

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DNAMethylation ChAMP

updated 12 months ago by sup0903 • 0 • written 4.2 years ago by Hongbii • 0

17 results • Page 1 of 1

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Comment: how many significant figures are there in DESeq2 output by ATpoint ★ 4.7k

If you want consistency then use a fixed software environment like Docker, wirh fixed code and thresholds that make sense. Rounding to near…

Comment: Compare TCGA-PAAD with GTEx gene expression by Jane • 0

why aren't there any answers?

Comment: Too many significant genes when integrating gtex and tcga by Jane • 0

I encountered the same issue: too many DEGs after limma analysis. It is sad that until today we can still see the paper published where GTE…

Comment: how many significant figures are there in DESeq2 output by Matthew McCormack ▴ 180

Thank you for your reply. It is good to know that cutoff of 0.05 means less than 0.05. My concerns are about consistency and reproducibili…

Comment: DiffBind edgeR normalization --- why are the normalization factors all equal to by ATpoint ★ 4.7k

No, normalization factors from edgeR rather than size factors from DESeq2 are not proportional, it's a different concept and implementation…

Votes

A: Unbalanced experiment with multiple samples from each patient.

Unbalanced experiment with multiple samples from each patient.

Answer: Vertical line at A=0, nothing else, on MA plot

Answer: GSVA Error Code "Calling gsva(expr=., gset.idx.list=., method=., ...) is defunct

Answer: Group-specific condition effects with individuals nested: matrix is not full ra

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