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DNAMethylation
•
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1
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2
replies
508
views
normalizatino of dna methylation EPIC data
DNA
minfiData
minfiDataEPIC
DNAMethylation
minfi
18 days ago
user_bioinfo
• 0
0
votes
0
replies
97
views
Batch Correction while implementing QSEA package
qsea
MEDIPS
MEDIPSData
DNAMethylation
5 weeks ago
User3088
• 0
0
votes
0
replies
376
views
Job:
Postdoctoral Research Associate in Computational Epigenomics
Phd
SingleCell
DNAMethylation
Shanghai
JobPosting
6 months ago
xiaolong
• 0
0
votes
7
replies
1.7k
views
Methylation Analysis experiment design using Limma
DNAMethylation
limma
methylationArrayAnalysis
10 months ago
hortense96
• 0
0
votes
0
replies
433
views
DMRcate error need at least two non-NA values to interpolate
DNAMethylation
DMRcate
11 months ago
Macsue
• 0
1
vote
6
replies
1.1k
views
unable to access Annotationhub latest record
DNAMethylation
AnnotationHub
EPICv2manifest
annotation
updated 11 months ago by
Tim Peters
▴ 230 • written 11 months ago by
s.malik
• 0
1
vote
3
replies
1.8k
views
Error in GOmeth function of missMethyl when EPICv2 annotation is used
DNAMethylation
GO
MethylationArray
missMethyl
EPICv2
12 months ago • updated 5 months ago
s.malik
• 0
0
votes
4
replies
1.8k
views
Seeking Strategies for Managing Duplicate CpG Entries in EPIC v2 Manifest
DNAMethylation
EPICv2
IlluminaHumanMethylationEPICmanifest
updated 12 months ago by
James W. MacDonald
68k • written 12 months ago by
rae.alshammari
▴ 10
1
vote
4
replies
1.1k
views
limma design model for categorical variable
DNAMethylation
limmaGUI
biostatistics
limma
updated 13 months ago by
Gordon Smyth
52k • written 13 months ago by
Jitendra
▴ 10
0
votes
2
replies
529
views
Sample-specific methylation values using QSEA
DNAMethylation
cfMeDIP-seq
cfDNA
qsea
13 months ago • updated 5 weeks ago
User3088
• 0
1
vote
4
replies
1.2k
views
EPIC or EPICv2 demo data of brain samples. FlowSorted.DLPFC.EPIC Availability?
DNAMethylation
MethylationArray
methylationArrayAnalysis
illumina
13 months ago
mikat
• 0
0
votes
1
reply
763
views
topGO() analysis of DMPs in missMethyl methylation analysis
DNAMethylation
missMethyl
Pathways
22 months ago
Grace
• 0
2
votes
6
replies
1.6k
views
cpg.annotate() in DMRcate error
DNAMethylation
methylationArrayAnalysis
DMRcate
MethylationArrayData
MethylationArray
updated 22 months ago by
Tim Peters
▴ 230 • written 22 months ago by
Grace
• 0
2
votes
6
replies
1.4k
views
No enriched GO terms CpGs
DNAMethylation
missMethyl
updated 2.0 years ago by
belinda.phipson
▴ 40 • written 2.0 years ago by
Joana
• 0
0
votes
0
replies
808
views
A survey of computational setups for Illumina Infinium DNA methylation EPIC array pipeline
DNAMethylation
wateRmelon
Computation
minfi
2.6 years ago
calen.p.ryan
• 0
3
votes
8
replies
1.8k
views
Annotation using QSEA package
DNAMethylation
QSEA
MEDIP
3.7 years ago
rtrivedi1
▴ 10
3
votes
5
replies
3.0k
views
Why the LogFC and delta-beta value are different in ChAMP
DNAMethylation
ChAMP
updated 12 months ago by
sup0903
• 0 • written 4.2 years ago by
Hongbii
• 0
17 results • Page
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Comment: sesameDataCache is not work properly on my system
by
Samreen
• 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data
by
James W. MacDonald
68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format
by
James W. MacDonald
68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages?
by
wilkinson
• 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification
by
ATpoint
★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Votes
Answer: Differential expression of proteins using somascan data
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Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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