Bioconductor DEGs

Showing : DEGs • reset

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26k

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deseq2 rna-seq DEGs cooks cutoff

updated 4 days ago by fuqichen1 • 0 • written 6.1 years ago by aishu.jp ▴ 30

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842

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DESeq2 Complicated.contrast DEGs

updated 2.4 years ago by Michael Love 43k • written 2.4 years ago by Mike • -60

-6

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1.0k

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complicated.contrast edgeR DEGs

2.4 years ago Mike • -60

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1.2k

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edgeR DEGs

updated 2.8 years ago by Gordon Smyth 52k • written 2.9 years ago by RR • 0

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1.0k

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edgeR DEGs DESEQ2 RNASeqData

3.0 years ago Raito92 ▴ 60

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1.2k

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RNAseq edgeR DEGs

updated 2.9 years ago by Gordon Smyth 52k • written 3.5 years ago by Ming ▴ 380

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3.0k

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DESeq2 DEGs

3.6 years ago • updated 3.5 years ago Ming ▴ 380

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7.5k

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RNASeq EnhancedVolcano DEGs

updated 3.6 years ago by Kevin Blighe ★ 4.0k • written 3.6 years ago by robledoj13 • 0

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1.2k

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DESeq2 Nullcook'svalues 2x3 DEGs

3.9 years ago andreia ▴ 10

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1.7k

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heatmaps DEGs PCA

updated 3.9 years ago by Kevin Blighe ★ 4.0k • written 3.9 years ago by MOHAMMAD • 0

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1.3k

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DEGs DESeq2

4.1 years ago 2021yearsold • 0

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1.0k

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mircomb mrna mirna degs interaction

4.6 years ago andreia ▴ 10

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980

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deseq2 mircomb degs dems

updated 4.6 years ago by Michael Love 43k • written 4.6 years ago by andreia ▴ 10

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1.1k

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clusterProfiler Bioconductor R DEGs

4.6 years ago tpm • 0

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3.1k

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edger DEGs normalization

updated 5.0 years ago by Gordon Smyth 52k • written 5.0 years ago by anikng ▴ 10

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1.2k

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edger DEGs

5.1 years ago anikng ▴ 10

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1.2k

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deseq2 rrpp DEGs RNAseq

updated 5.2 years ago by Michael Love 43k • written 5.2 years ago by gmchaput • 0

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4.7k

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heatmap DEGs RNAseq DESeq2

updated 5.5 years ago by mikhael.manurung ▴ 280 • written 5.5 years ago by danikadigiacomo • 0

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1.4k

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edger degs paired design

updated 6.6 years ago by Gordon Smyth 52k • written 6.6 years ago by takumima ▴ 10

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2.4k

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limma heatmap DEGs

updated 7.0 years ago by Gordon Smyth 52k • written 7.0 years ago by lawarde.ankita1 ▴ 30

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1.2k

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edgeR DEGS common disperion

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by baus87 • 0

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3.1k

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limma microarray DEGs p values lfc

7.6 years ago rkp • 0

22 results • Page 1 of 1

Recent ...

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Comment: input for singR function by iamin053 • 0

Hi Paria, I'm wondering if you were able to get an answer on this please. I would greatly appreciate any comments!

Comment: build samplesheet and plot profile by yf • 0

![enter image description here][1] [1]: /media/images/8ea93bd0-bc90-443d-a332-4701f54a

Answer: I am having issues with bowtie2_build by James W. MacDonald 67k

Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…

Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k

Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…

Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k

FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…

Votes

A: Doubt about the "zero expression" genes or genes with no reads at all in the co

Answer: Unable to install nloptr

Answer: ensembldb for Homo Sapiens organism containing superfluous SYMBOL genes?

C: How does edgeR cpm function calculate log(CPM) values?

Answer: Selection of correct coefficients or contrasts in DESeq2

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