Bioconductor DEGS

Showing : DEGS • reset

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26k

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deseq2 rna-seq DEGs cooks cutoff

updated 28 days ago by fuqichen1 • 0 • written 6.1 years ago by aishu.jp ▴ 30

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864

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DESeq2 Complicated.contrast DEGs

updated 2.5 years ago by Michael Love 43k • written 2.5 years ago by Mike • -60

-6

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complicated.contrast edgeR DEGs

2.5 years ago Mike • -60

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1.2k

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edgeR DEGs

updated 2.9 years ago by Gordon Smyth 52k • written 2.9 years ago by RR • 0

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1.1k

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edgeR DEGs DESEQ2 RNASeqData

3.1 years ago Raito92 ▴ 60

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1.2k

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RNAseq edgeR DEGs

updated 3.0 years ago by Gordon Smyth 52k • written 3.6 years ago by Ming ▴ 380

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3.1k

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DESeq2 DEGs

3.6 years ago Ming ▴ 380

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7.7k

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RNASeq EnhancedVolcano DEGs

updated 3.7 years ago by Kevin Blighe ★ 4.0k • written 3.7 years ago by robledoj13 • 0

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1.2k

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DESeq2 Nullcook'svalues 2x3 DEGs

3.9 years ago andreia ▴ 10

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1.7k

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heatmaps DEGs PCA

updated 4.0 years ago by Kevin Blighe ★ 4.0k • written 4.0 years ago by MOHAMMAD • 0

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1.3k

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DEGs DESeq2

4.1 years ago 2021yearsold • 0

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1.1k

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mircomb mrna mirna degs interaction

4.7 years ago andreia ▴ 10

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992

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deseq2 mircomb degs dems

updated 4.7 years ago by Michael Love 43k • written 4.7 years ago by andreia ▴ 10

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1.1k

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clusterProfiler Bioconductor R DEGs

4.7 years ago tpm • 0

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3.1k

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edger DEGs normalization

updated 5.1 years ago by Gordon Smyth 52k • written 5.1 years ago by anikng ▴ 10

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1.2k

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edger DEGs

5.1 years ago anikng ▴ 10

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1.3k

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deseq2 rrpp DEGs RNAseq

updated 5.3 years ago by Michael Love 43k • written 5.3 years ago by gmchaput • 0

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4.8k

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heatmap DEGs RNAseq DESeq2

updated 5.6 years ago by mikhael.manurung ▴ 280 • written 5.6 years ago by danikadigiacomo • 0

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1.4k

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edger degs paired design

updated 6.6 years ago by Gordon Smyth 52k • written 6.6 years ago by takumima ▴ 10

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2.5k

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limma heatmap DEGs

updated 7.1 years ago by Gordon Smyth 52k • written 7.1 years ago by lawarde.ankita1 ▴ 30

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1.3k

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edgeR DEGS common disperion

updated 7.5 years ago by Aaron Lun ★ 28k • written 7.5 years ago by baus87 • 0

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3.2k

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limma microarray DEGs p values lfc

7.7 years ago rkp • 0

22 results • Page 1 of 1

Recent ...

Replies

Answer: cameraPR() non directional test by Hugo Varet ▴ 80

Dear Gordon, thank you for your answer, that's exactly what I wanted to know. Happy to see you'll make it available in the next version o…

Answer: DEseq2 design for additive treatment by ATpoint ★ 4.7k

See https://support.bioconductor.org/p/69104/#69197, https://support.bioconductor.org/p/129755/ for testing against an average. Many other …

Comment: Use of limma R package with targeted proteomics for DE analysis by svlachavas ▴ 840

Dear Gordon, thanks a million for your reply (just saw it, did not get any notification through email) !! Regarding the log2 transformation…

Answer: cameraPR() non directional test by Gordon Smyth 52k

Yes, you can still do non-directional tests using cameraPR(), but it's not quite as easy as it was using the original camera() function as …

Answer: WGCNA with paired samples by Ivo • 0

You can use batch correction on the person ID and then continue WGCNA as usual using the corrected matrix. You can use e.g. sva::ComBat or …

Votes

Answer: DEseq2 design for additive treatment

Answer: limma::voom vs edgeR::voomLmFit - when to use?

Comment: limma::voom vs edgeR::voomLmFit - when to use?

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