Showing : BiocGenerics • reset
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plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 3.9 years ago by 42k • written 3.9 years ago by • 0
0
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2
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Problem installing BiocGenerics package
BiocGenerics BiocGenerics
updated 10.3 years ago by ★ 8.2k • written 10.3 years ago by ★ 13k
2
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2
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3.0k
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DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 3.3 years ago by 25k • written 3.3 years ago by • 0
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14
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2.9k
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BiocGenerics 0.5.6 not loading properly
Rsamtools BiocGenerics Rsamtools BiocGenerics
updated 11.2 years ago by ★ 8.2k • written 11.2 years ago by ▴ 200
0
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2
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Trouble installing BiocGenerics
BiocGenerics BiocGenerics
10.3 years ago Andreas Leha ▴ 30
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2
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2.6k
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[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.1 years ago by 25k • written 11.1 years ago by ▴ 40
1
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4
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2.5k
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biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.4 years ago by 25k • written 6.4 years ago by • 0
0
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4
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2.3k
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Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 9.7 years ago by 65k • written 9.7 years ago by ▴ 430
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Biocgenerics updating problem on ubuntu 17.10
bioconductor biocgenerics ubuntu package updates r update
6.5 years ago siinemselvi • 0
7
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4
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2.1k
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BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 6.6 years ago by 16k • written 6.6 years ago by ▴ 40
0
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8
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2.0k
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IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 11.5 years ago by ★ 11k • written 11.5 years ago by 16k
2
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2
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2.0k
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IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
5.9 years ago GENOMIC_region • 0
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BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics BiocGenerics
10.6 years ago Wolfgang Huber ★ 13k
1
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7
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1.6k
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DESeqDataSetFromMatrix error
BiocGenerics DESeq2 DEGreport RNASeqData DEG
updated 22 months ago by 65k • written 22 months ago by • 0
1
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6
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1.6k
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Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
6.3 years ago rea ▴ 10
0
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2
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1.6k
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GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 11.3 years ago by 25k • written 11.3 years ago by ▴ 80
6
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6
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1.6k
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Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
updated 6.7 years ago by 16k • written 6.7 years ago by ▴ 20
0
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2
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1.5k
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replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges biocgenerics dirichletmultinomial
updated 7.5 years ago by 25k • written 7.5 years ago by • 0
2
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3
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1.2k
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Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
8.5 years ago • updated 6 months ago Konstantinos Yeles ▴ 80
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1.2k
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答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund BiocGenerics cummeRbund BiocGenerics
10.1 years ago Dan Tenenbaum ★ 8.2k
2
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1
reply
1.1k
views
Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 6.2 years ago by 65k • written 6.2 years ago by • 0
0
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1
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1.1k
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BiocGenerics paste strange behavior (bug?)
biocgenerics
6.8 years ago Peter Langfelder ★ 3.0k
0
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1
reply
980
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Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics BiocGenerics
updated 11.6 years ago by ★ 8.2k • written 11.6 years ago by ▴ 10
2
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4
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620
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
11 months ago Michael Steinbaugh ▴ 90
1
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1
reply
566
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics ddCt
updated 13 months ago by ▴ 10 • written 15 months ago by ▴ 10
3
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3
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242
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Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array BiocGenerics BiocParallel Biobase
4 weeks ago • updated 28 days ago jacques.imbert • 0
26 results • Page 1 of 1
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Comment: Ensembl plants at annotationHub? by Daniele • 0
Dear Johannes, Would it be possible to create the EnsDb for Triticum aestivum (IWGSC)? Thank you very much, Daniele
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools by BioinfGuru ▴ 30
Figured it out with ?eigencorplot, thanks Michael. I was trying to pass 10 PCs when I only had 8, and I was including metadata columns that…
Answer: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by makala • 0
Thanks a lot!
Comment: DECIPHER::idTaxa - broken link to download GTDB r220 (modified) trainig set by Erik Wright ▴ 150
Thanks for notifying us of this broken link. It should be fixed on the Downloads page now. [1] [1]: http://www2.decipher.codes/Classificat…
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa by Matthew Thornton ▴ 360
So it turns out that if the count and the size are the same in 'GOstats", the odds ratio is 'inf'. These are causing the issue. Thank you!!
Votes
Comment: How can I create a eigencorplot of pca created from deseq2 object with PCAtools
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Answer: Importing a GraphNEL into Cytoscape with RCy3 with error: "Error in cyrestPUT(pa
Rsubread counting peaks ATACseq
Comment: Can DESeq2 rlog normalized matrix reflects time course result directly?
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