Showing : BiocGenerics • reset
3
votes
3
replies
640
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Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array BiocGenerics BiocParallel Biobase
6 months ago jacques.imbert • 0
2
votes
4
replies
860
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
17 months ago Michael Steinbaugh ▴ 90
1
vote
1
reply
729
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics ddCt
updated 19 months ago by ▴ 10 • written 21 months ago by ▴ 10
1
vote
7
replies
2.0k
views
DESeqDataSetFromMatrix error
BiocGenerics DESeq2 DEGreport RNASeqData DEG
updated 2.3 years ago by 67k • written 2.3 years ago by • 0
2
votes
2
replies
3.4k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 3.8 years ago by 25k • written 3.8 years ago by • 0
0
votes
2
replies
5.6k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 4.4 years ago by 42k • written 4.4 years ago by • 0
2
votes
2
replies
2.2k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.4 years ago GENOMIC_region • 0
2
votes
1
reply
1.2k
views
Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 6.7 years ago by 67k • written 6.7 years ago by • 0
1
vote
6
replies
1.8k
views
Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
6.8 years ago rea ▴ 10
1
vote
4
replies
2.7k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 6.9 years ago by 25k • written 6.9 years ago by • 0
0
votes
4
replies
2.4k
views
Biocgenerics updating problem on ubuntu 17.10
bioconductor biocgenerics ubuntu package updates r update
7.0 years ago siinemselvi • 0
7
votes
4
replies
2.3k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 7.1 years ago by 16k • written 7.1 years ago by ▴ 40
6
votes
6
replies
1.8k
views
Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
updated 7.1 years ago by 16k • written 7.1 years ago by ▴ 20
0
votes
1
reply
1.2k
views
BiocGenerics paste strange behavior (bug?)
biocgenerics
7.2 years ago Peter Langfelder ★ 3.0k
0
votes
2
replies
1.7k
views
replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges biocgenerics dirichletmultinomial
updated 8.0 years ago by 25k • written 8.0 years ago by • 0
2
votes
3
replies
1.5k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
9.0 years ago • updated 12 months ago Konstantinos Yeles ▴ 80
0
votes
4
replies
2.4k
views
Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 10.2 years ago by 67k • written 10.2 years ago by ▴ 430
0
votes
0
replies
1.3k
views
答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund BiocGenerics cummeRbund BiocGenerics
10.5 years ago Dan Tenenbaum ★ 8.2k
0
votes
2
replies
3.5k
views
Problem installing BiocGenerics package
BiocGenerics BiocGenerics
updated 10.8 years ago by ★ 8.2k • written 10.8 years ago by ★ 13k
0
votes
2
replies
2.8k
views
Trouble installing BiocGenerics
BiocGenerics BiocGenerics
10.8 years ago Andreas Leha ▴ 30
0
votes
0
replies
1.9k
views
BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics BiocGenerics
11.1 years ago Wolfgang Huber ★ 13k
0
votes
2
replies
2.8k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 11.6 years ago by 25k • written 11.6 years ago by ▴ 40
0
votes
14
replies
3.1k
views
BiocGenerics 0.5.6 not loading properly
Rsamtools BiocGenerics Rsamtools BiocGenerics
updated 11.6 years ago by ★ 8.2k • written 11.6 years ago by ▴ 200
0
votes
2
replies
1.7k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 11.8 years ago by 25k • written 11.8 years ago by ▴ 80
0
votes
8
replies
2.2k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 11.9 years ago by ★ 11k • written 11.9 years ago by 16k
0
votes
1
reply
1.1k
views
Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics BiocGenerics
updated 12.1 years ago by ★ 8.2k • written 12.1 years ago by ▴ 10
26 results • Page 1 of 1
Recent ...
Replies
Answer: Combining RNAseq and microarray data using edgeR/limma-voom by Gordon Smyth 51k
I agree with James, although I tend to combine analyses using geneset tests rather than by meta analysis tools like GeneMeta. > My questio…
Comment: Adjusted p-values become NA when sub-setting samples by txema.heredia • 0
Thanks! I've been looking into DESeq2's code and, indeed, I get matching results when running manually the code inherited from the `genefi…
Answer: DESeq2 interaction between cancer cells and microenvironment cells by Michael Love 42k
I don't really know what you mean by "come from the contamination". You can look at the main effects and the interaction, but I don't know …
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Fahd • 0
Thanks for looking into this. This issue results in the incorrect usage of multiple ORA software including EnrichR.
Comment: incomplete official symbol mitochondrial genes in org.Hs.eg.db? by Guido Hooiveld ★ 4.1k
Yes, I understand the implications of replacing the `OrgDb` packages in release. Maybe an upload to the annotationHub or GitHub could be an…
Votes
A: p.adjust BH generates duplicate values
Answer: Adjusted p-values become NA when sub-setting samples
Comment: Suggestion for FGSEA and GSEA creation for C57BL/6J Mice
Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
A: How does edgeR cpm function calculate log(CPM) values?
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