Showing : BiocGenerics • reset
3
votes
3
replies
933
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Reading huge bismark coverage files using bbseq::read.bismark
HDF5Array BiocGenerics BiocParallel Biobase
11 months ago • updated 10 months ago jacques.imbert • 0
2
votes
4
replies
957
views
BiocGenerics binary is outdated for macOS ARM
BiocGenerics
21 months ago Michael Steinbaugh ▴ 90
1
vote
1
reply
852
views
BiocGenerics package: 404 error during R shiny app deployment
BiocGenerics ddCt
updated 23 months ago by ▴ 10 • written 2.1 years ago by ▴ 10
1
vote
7
replies
2.4k
views
DESeqDataSetFromMatrix error
BiocGenerics DESeq2 DEGreport RNASeqData DEG
updated 2.7 years ago by 68k • written 2.7 years ago by • 0
2
votes
2
replies
3.7k
views
DiffBind installation fails: Error: package ‘BiocGenerics’ 0.34.0 is loaded, but >= 0.36.0 is required by ‘IRanges’
systemPipeR Bioconductor DiffBind BiocGenerics
updated 4.1 years ago by 25k • written 4.1 years ago by • 0
0
votes
2
replies
6.2k
views
plotPCA with DESeq2 results in unable to find an inherited method for function plotPCA for signature matrix Error
deseq2 pheatmap RColorBrewer BiocGenerics
updated 4.8 years ago by 43k • written 4.8 years ago by • 0
2
votes
2
replies
2.3k
views
IRanges which are not S4 generic: endoapply mendoapply error in loading oligoclasses
iranges oligoclasses BiocGenerics
6.7 years ago GENOMIC_region • 0
2
votes
1
reply
1.3k
views
Using 'BSgenome::export' to write each chromosome of an organism into separate files
bsgenome biocgenerics bsapply export
updated 7.0 years ago by 68k • written 7.0 years ago by • 0
1
vote
6
replies
2.0k
views
Failure to update BiocGenerics in Ubuntu 17.10 from 0.22.1 to 0.23 and higher
BiocGenerics
7.1 years ago rea ▴ 10
1
vote
4
replies
2.8k
views
biocLite updating problem with Ubuntu 17.10
ubuntu biocgenerics s4vectors IRanges annotationdbi
updated 7.2 years ago by 25k • written 7.2 years ago by • 0
0
votes
4
replies
2.5k
views
Biocgenerics updating problem on ubuntu 17.10
bioconductor biocgenerics ubuntu package updates r update
7.3 years ago siinemselvi • 0
7
votes
4
replies
2.5k
views
BiocGenerics built with R 3.4.2 changes behaviour
biocgenerics iranges variantannotation
updated 7.4 years ago by 16k • written 7.4 years ago by ▴ 40
6
votes
6
replies
1.9k
views
Implementing fast mathematical and statistical operations on genomic variables in bioconductor
genomicranges biocgenerics rlelist genomicvars iranges
updated 7.5 years ago by 16k • written 7.5 years ago by ▴ 20
0
votes
1
reply
1.2k
views
BiocGenerics paste strange behavior (bug?)
biocgenerics
7.6 years ago Peter Langfelder ★ 3.0k
0
votes
2
replies
1.8k
views
replacing previous import stats::mad by BiocGenerics::mad when loading IRanges
iranges biocgenerics dirichletmultinomial
updated 8.4 years ago by 25k • written 8.4 years ago by • 0
2
votes
3
replies
1.5k
views
Problem with function combine regarding merging two data frames based on their common rows
bioconductor merge data frames combine biocgenerics
9.3 years ago • updated 16 months ago Konstantinos Yeles ▴ 80
0
votes
4
replies
2.5k
views
Access to BiocGenerics 0.11.4 package
BiocGenerics
updated 10.5 years ago by 68k • written 10.5 years ago by ▴ 430
0
votes
0
replies
1.4k
views
答复: 答复: 答复: problem with \"readCufflinks\"
cummeRbund BiocGenerics cummeRbund BiocGenerics
10.9 years ago Dan Tenenbaum ★ 8.2k
0
votes
2
replies
3.6k
views
Problem installing BiocGenerics package
BiocGenerics BiocGenerics
updated 11.1 years ago by ★ 8.2k • written 11.1 years ago by ★ 13k
0
votes
2
replies
2.9k
views
Trouble installing BiocGenerics
BiocGenerics BiocGenerics
11.1 years ago Andreas Leha ▴ 30
0
votes
0
replies
2.0k
views
BiocGenerics::plotMA (was: "egdeR troubles under new R 3.02")
BiocGenerics BiocGenerics
11.4 years ago Wolfgang Huber ★ 13k
0
votes
2
replies
2.8k
views
[R] Error in setMethod("combine"... was - Error when installing globaltest package
Infrastructure Cancer Biobase tkWidgets globaltest BiocInstaller BiocGenerics Cancer
updated 12.0 years ago by 25k • written 12.0 years ago by ▴ 40
0
votes
14
replies
3.4k
views
BiocGenerics 0.5.6 not loading properly
Rsamtools BiocGenerics Rsamtools BiocGenerics
updated 12.0 years ago by ★ 8.2k • written 12.0 years ago by ▴ 200
0
votes
2
replies
1.8k
views
GSEABase error parsing msigdb_v3.1.xml
GO Infrastructure hgu95av2 Biobase annotate graph Category AnnotationDbi BiocGenerics GO
updated 12.1 years ago by 25k • written 12.1 years ago by ▴ 80
0
votes
8
replies
2.3k
views
IRanges/List oddity: do.call of `c` on a list of IRangesList returns "list" only when the list is named
Cancer IRanges BiocGenerics Cancer IRanges BiocGenerics
updated 12.3 years ago by ★ 11k • written 12.3 years ago by 16k
0
votes
1
reply
1.1k
views
Problem installing CummeRbund 2.0.0 (BiocGenerics)
BiocGenerics BiocGenerics
updated 12.4 years ago by ★ 8.2k • written 12.4 years ago by ▴ 10
26 results • Page 1 of 1
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Comment: sesameDataCache is not work properly on my system by Samreen • 0
Any luck with this? I have tried all of the above and it still doesn't work. This is my session info and I'm on a cluster computing environ…
Answer: Using tximport for kallisto aligned TOIL data by James W. MacDonald 68k
If you just have the transcript data, you probably don't need (and maybe cannot use) `tximport`. Instead you could just do the naive thing …
Answer: Reading gene expression data in GPR format and converting it to xlsx format by James W. MacDonald 68k
Setting aside the inadvisability of putting these data into Excel (and I should point out that these data are not single-cell, but instead …
Comment: concentration tables suitable as input for new packages? by wilkinson • 0
I am grateful for your response. Software such as "Spectra" may parse MS-data to generate tables of concentrations, for instance. But inste…
Comment: Removing UTR from GTF for gene quantification by ATpoint ★ 4.7k
Consider asking at biostars or bioinformatics reddit, since this is not directly related to a Bioconductor problem. Anyway, a couple of th…
Votes
Answer: Differential expression of proteins using somascan data
Answer: Surprising behavior for DEXseq dispersion estimate plot?
Answer: Handle zero effective gene length when tximport RSEM results
Handle zero effective gene length when tximport RSEM results
How to remove genes with 0 counts in tximport?
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