Showing : Annotation • reset
1
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Gene IDs conversion between Ensembl and NCBI nomenclature for non-model species
annotation geneIDs flatheadmullet
updated 11 days ago by 68k • written 12 days ago by • 0
1
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1
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167
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Merging annotation with differential expression output
annotation RNASeqData
updated 20 days ago by 68k • written 20 days ago by • 0
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2
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385
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Annotation package for Manduca sexta
annotation Manducasexta AnnotationData
20 days ago • updated 18 days ago GA ▴ 10
1
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2
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1.6k
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help documentation for keytypes in annotationdbi packages
annotation
updated 6 weeks ago by ▴ 10 • written 4.5 years ago by • 0
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0
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129
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Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
8 weeks ago Muhammad • 0
0
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1
reply
181
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affymetrix
genomes Annotation
updated 11 weeks ago by 68k • written 11 weeks ago by • 0
5
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13
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2.0k
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Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
5 months ago KABILAN • 0
0
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1
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337
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how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 6 months ago by 68k • written 6 months ago by • 0
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0
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418
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Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
7 months ago Aleena ▴ 30
1
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2
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974
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Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
9 months ago ronin • 0
2
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2
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805
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Get gene symbols for a set of hg19 coordinates
annotation hg19
10 months ago pcantalupo ▴ 10
1
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6
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1.2k
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unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 12 months ago by ▴ 230 • written 12 months ago by • 0
2
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2
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1.1k
views
Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 12 months ago by ▴ 10
0
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0
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613
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Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
14 months ago nilanjanamani88 • 0
0
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5
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2.4k
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Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 11.3 years ago by ★ 13k
5
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11
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5.0k
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How to annotate gene names for genomic coordinates?
annotation
written 9.8 years ago by • 0
0
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1
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907
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Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 18 months ago by ▴ 780 • written 18 months ago by • 0
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0
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1.2k
views
News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
18 months ago kayla.interdonato ▴ 160
0
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1
reply
7.0k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 19 months ago by 68k • written 19 months ago by • 0
3
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4
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1.1k
views
Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 21 months ago by 68k • written 21 months ago by • 0
2
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4
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1.6k
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Use with_go along with other filters in getBM function
Annotation biomaRt
23 months ago • updated 22 months ago RuBBiT0 ▴ 10
0
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2
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1.4k
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How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 23 months ago by 68k • written 23 months ago by • 0
0
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4
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1.7k
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BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
23 months ago Michael Steinbaugh ▴ 90
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0
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887
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AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
2.0 years ago ahiser • 0
0
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3
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1.1k
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Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
2.0 years ago christian.dina • 0
0
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0
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1.1k
views
News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
2.1 years ago kayla.interdonato ▴ 160
2
votes
1
reply
835
views
Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
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1
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1.3k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 2.2 years ago by 68k • written 2.2 years ago by ▴ 50
3
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3
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1.8k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 2.2 years ago by ★ 4.1k • written 2.2 years ago by ▴ 10
0
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1
reply
803
views
Bioconductor tool for curating annotations?
Annotation
updated 2.2 years ago by ▴ 760 • written 2.2 years ago by ▴ 180
3
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2
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3.1k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
2.2 years ago m-bihie ▴ 10
1
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9
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2.0k
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Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 2.2 years ago by 68k • written 2.2 years ago by • 0
0
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3
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1.3k
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A look inside annotation packages
Annotation
2.3 years ago Ed Siefker ▴ 230
3
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2
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8.1k
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How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 2.3 years ago by ▴ 200 • written 7.3 years ago by • 0
2
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3
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2.6k
views
Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 2.2 years ago by • 0 • written 2.4 years ago by ▴ 10
0
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5
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3.1k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 2.5 years ago by ★ 4.1k • written 2.5 years ago by ▴ 30
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0
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1.1k
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News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
2.5 years ago kayla.interdonato ▴ 160
0
votes
1
reply
813
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 2.6 years ago by 68k • written 2.6 years ago by • 0
1
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3
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2.8k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.8 years ago by 68k • written 2.8 years ago by ▴ 60
0
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1
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1.3k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
3.0 years ago kayla.interdonato ▴ 160
0
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0
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884
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
3.0 years ago Ava • 0
0
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1
reply
1.2k
views
peak annotation
ChIPpeakAnno Annotation
updated 3.0 years ago by ▴ 70 • written 3.1 years ago by ▴ 670
0
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0
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979
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using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
3.2 years ago Amandeep • 0
0
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1
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1.6k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.2 years ago by ▴ 890 • written 3.4 years ago by • 0
0
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1
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1.8k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 3.3 years ago by 4.1k • written 3.3 years ago by ▴ 20
0
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0
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941
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
3.3 years ago Ahdee ▴ 60
0
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2
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3.1k
views
getBM error in the biomaRt R package
Annotation
updated 2.7 years ago by • 0 • written 3.4 years ago by • 0
0
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1
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1.4k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 3.4 years ago by • 0
0
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0
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1.1k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.4 years ago Shane • 0
0
votes
1
reply
1.2k
views
Issue with annotation package mouse4302.db
mouse4302.db annotation
updated 3.4 years ago by 68k • written 3.4 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Answer: Log2foldchange strange behavior by ATpoint ★ 4.8k
The `results()` output you show is perfectly in line with the oputput of `plotCounts()`, hence it is not a DESeq2 issue. UBE3A is higher in…
Comment: DeSeq Strategies for run to run Replication by i.c.denhond • 0
Dear Michael, could you please comment on how to properly apply a vst transformation to a new dataset (in this case, left-out samples)? I …
Comment: Log2foldchange strange behavior by RambakKulit • 0
Okay, I'm attaching those now. Just to provide a bit more context for the results below: I downloaded both count and TPM data from the GTEx…
Comment: Log2foldchange strange behavior by ATpoint ★ 4.8k
This cannot be answered here like this. Your results tables are not direct DESeq2 output, maybe it's a merging error during generation of t…
Comment: RE:proper pooling design by bicecac533 • 0
I look forward to reading more articles like this! [Stickman Boost][1] [1]: https://stickmanboost.com
Votes
Answer: Origin of the labels for the SingleCellMultiModal dataset
Answer: PhD scholar
Answer: how to use `arrayWeightsQuick()`?
Answer: how to use `arrayWeightsQuick()`?
Having Trouble Using CNE12() and CNE21() in CNEr
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