Showing : Annotation • reset
1
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help documentation for keytypes in annotationdbi packages
annotation
updated 14 days ago by ▴ 10 • written 4.4 years ago by • 0
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0
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85
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Help with mouse cell type annotation
annotation SingleR mouse SingleCellData scRNAseq
26 days ago Muhammad • 0
0
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1
reply
157
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affymetrix
genomes Annotation
updated 7 weeks ago by 68k • written 7 weeks ago by • 0
5
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13
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1.9k
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Installing annotation package in locally
AnnotationDbi AnnotationHub Annotation AnnotationForge
4 months ago KABILAN • 0
0
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1
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316
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how do I convert an Ilumn IDREF to a CPG loci
AnnotationDbi Annotation annotation BiologicalQuestion
updated 5 months ago by 68k • written 5 months ago by • 0
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0
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390
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Job: Ensembl Job Vacancies
genomes Annotation GenomicVariation ensembldb
6 months ago Aleena ▴ 30
1
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2
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931
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Struggling to convert a large list of non-model genes into human orthologs, any suggestions?
annotation
8 months ago ronin • 0
2
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2
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759
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Get gene symbols for a set of hg19 coordinates
annotation hg19
9 months ago pcantalupo ▴ 10
1
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6
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1.2k
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unable to access Annotationhub latest record
DNAMethylation AnnotationHub EPICv2manifest annotation
updated 11 months ago by ▴ 230 • written 11 months ago by • 0
2
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2
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1.0k
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Only positive enrichment score in GSEA
clusterProfiler annotation gseGO gsea OrgDb
written 11 months ago by ▴ 10
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0
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584
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Best method for annotating distal peaks
ChIPSeq annotation ChIPpeakAnno
13 months ago nilanjanamani88 • 0
0
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5
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2.4k
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Normalizing Affy Almac Xcel Array Data from CEL files
Annotation affy oligo ffpe Annotation affy oligo ffpe
written 11.2 years ago by ★ 13k
5
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11
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4.9k
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How to annotate gene names for genomic coordinates?
annotation
written 9.7 years ago by • 0
0
votes
1
reply
872
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Create design matrix for differential methylation analysis
Annotation annotate DifferentialMethylation minfiDataEPIC
updated 17 months ago by ▴ 780 • written 17 months ago by • 0
1
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0
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1.1k
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News: Bioconductor 3.18 db0s, OrgDbs, and TxDbs now available
db0 release Annotation
17 months ago kayla.interdonato ▴ 160
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1
reply
6.7k
views
Bioconductor version cannot be validated
Bioconductor Annotation Ann
updated 18 months ago by 68k • written 18 months ago by • 0
3
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4
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1.1k
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Questions Trying to Re-create MicroArray Data (GSE97562) (Fig. 2)
MicroRNAArrayData GSE97562 pd.hugene.1.0.st.v1 Annotation
updated 20 months ago by 68k • written 20 months ago by • 0
2
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4
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1.6k
views
Use with_go along with other filters in getBM function
Annotation biomaRt
21 months ago RuBBiT0 ▴ 10
0
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2
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1.4k
views
How to find probe enhancer annotation for Illumina EPIC array?
IlluminaHumanMethylationEPICmanifest ChAMP annotation
updated 22 months ago by 68k • written 22 months ago by • 0
0
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4
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1.7k
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BioCann repository index warning on Apple Silicon (Bioc 3.17 / R 4.3)
Annotation
22 months ago Michael Steinbaugh ▴ 90
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0
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867
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AnnotationDbi Error: PROSITE is defunct.
ChipDb AnnotationDbi Annotation
23 months ago ahiser • 0
0
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3
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1.1k
views
Annotated dendogram (tree) from tbl_graph
dendogram ggtreeExtra ggtree annotation Annotation
23 months ago christian.dina • 0
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0
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1.1k
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News: Bioconductor 3.17 db0s, OrgDbs, and TxDbs now available
release db0 Annotation
24 months ago kayla.interdonato ▴ 160
2
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1
reply
807
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Doubts about manipulation and annotation of microarray files deposited at GEO
MicroarrayData Annotation GEOdata
updated 2.1 years ago by 68k • written 2.1 years ago by • 0
0
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1
reply
1.3k
views
Create an Annotation DB file for a non-model organism
AnnotationDbi annotation ChIPseeker
updated 2.1 years ago by 68k • written 2.1 years ago by ▴ 50
3
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3
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1.7k
views
Is ther an annotation package for sheep (Ovis aries)
sheep database_package Annotation
updated 2.1 years ago by ★ 4.1k • written 2.1 years ago by ▴ 10
0
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1
reply
781
views
Bioconductor tool for curating annotations?
Annotation
updated 2.1 years ago by ▴ 760 • written 2.1 years ago by ▴ 180
3
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2
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3.1k
views
I cannot install annotables package in Rstudio (macOS)
DESeq2 PackageTypeData package Annotation
2.1 years ago m-bihie ▴ 10
1
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9
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1.9k
views
Is it possible to annotate a GRanges Object that has scaffolding names and not chromosome numbers?
Annotation
updated 2.1 years ago by 68k • written 2.2 years ago by • 0
0
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3
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1.2k
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A look inside annotation packages
Annotation
2.3 years ago • updated 2.2 years ago Ed Siefker ▴ 230
3
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2
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7.9k
views
How to convert Illumina HT_12_v4 annotation
convert R annotation microarray illumina human ht-12 v4
updated 2.3 years ago by ▴ 200 • written 7.3 years ago by • 0
2
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3
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2.5k
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Packages dependent on rtracklayer fail: ERROR: lazy loading failed, unable to load shared object rtracklayer.so
SingleCellMultiModal ensembldb rtracklayer Annotation
updated 2.1 years ago by • 0 • written 2.3 years ago by ▴ 10
0
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5
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3.0k
views
Error when annotating ENSEMBLE transcript IDs from chicken annotation DB
R ensembldb Annotation
updated 2.4 years ago by ★ 4.1k • written 2.4 years ago by ▴ 30
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0
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1.1k
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News: Bioconductor 3.16 db0s, OrgDbs and TxDbs now available
release db0 annotation
2.5 years ago kayla.interdonato ▴ 160
0
votes
1
reply
800
views
Annotation data packages for plant parasitic nematodes
AnnotationData Annotation
updated 2.5 years ago by 68k • written 2.5 years ago by • 0
1
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3
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2.7k
views
Trouble importing my own Gene Ontology Annotation into topGO
Annotation GeneOntology topGO GO
updated 2.7 years ago by 68k • written 2.7 years ago by ▴ 60
0
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1
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1.3k
views
News: Bioconductor 3.15 db0s, OrgDbs and TxDbs now available
annotation release db0
2.9 years ago kayla.interdonato ▴ 160
0
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0
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859
views
low mapping between annotated genome and transcriptome
transcriptome Annotation mapping
2.9 years ago Ava • 0
0
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1
reply
1.1k
views
peak annotation
ChIPpeakAnno Annotation
updated 2.9 years ago by ▴ 70 • written 3.0 years ago by ▴ 670
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0
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960
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using annotation data of an organism(eg. Oryza sativa) from AnnotationHub for mgoSim
AnnotationHubSoftware GOSemSim annotation
3.1 years ago Amandeep • 0
0
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1
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1.6k
views
SNP annotation
SNPRelate SNP GWASTools Annotation GWASdata
updated 3.1 years ago by ▴ 890 • written 3.3 years ago by • 0
0
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1
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1.7k
views
How to download annotation package for oryza sativa Japonica and Oryza sativa indica for pathway analysis?
reactomePA package annotation
updated 3.2 years ago by 4.1k • written 3.2 years ago by ▴ 20
0
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0
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930
views
Is it possible to output ensembl id for annotatr build_annotations basicgenes?
Annotation annotatr
3.2 years ago Ahdee ▴ 50
0
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2
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3.0k
views
getBM error in the biomaRt R package
Annotation
updated 2.6 years ago by • 0 • written 3.3 years ago by • 0
0
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1
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1.3k
views
How to get Cytogenetic band for muscles gene by using Biomart or other tools in R
Annotation biomaRt ensembldb
written 3.3 years ago by • 0
0
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0
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1.1k
views
Error with getBM: 'The query to the BioMart webservice returned an invalid result.'
process annotationTools AnnotationFilter Annotation biomaRt
3.3 years ago Shane • 0
0
votes
1
reply
1.2k
views
Issue with annotation package mouse4302.db
mouse4302.db annotation
updated 3.3 years ago by 68k • written 3.3 years ago by • 0
1
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1
reply
1.9k
views
Is there any R package for filtering out SNP markers?
Tutorial annotation
updated 3.5 years ago by ★ 4.0k • written 5.6 years ago by ▴ 20
0
votes
1
reply
905
views
anotacion para Anopheles Albimanus
anopheles_albimanus Annotation
updated 3.5 years ago by 4.1k • written 3.5 years ago by • 0
3
votes
1
reply
2.8k
views
Converting between UCSC id and gene symbol with bioconductor annotation resources
AnnotationData AnnotationDbi annotation
updated 3.5 years ago by 68k • written 3.5 years ago by • 0
50 results • Page 1 of 1
Recent ...
Replies
Comment: Can't post a question? by DavideSant • 0
Thank you, this was super useful!
Comment: Error in retrieving clinical data by silickas • 0
Thank you for the reply. I will try to do that next time. This time instead, I used the GenomicDataCommons package to download clinical dat…
Comment: deseq2 lfc shrinkage with few DEGs by Robert • 0
I'm dealing with a similar situation. I assume the coefficients related to batch effect would need to be included in idx also, is this corr…
Comment: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks by Luca • 0
Thank you so much!! Yeah I had thought about this too, regarding the fact that DiffBind is a wrapper for counting peaks in this way in R di…
Comment: DESeq2 testing ratio of ratios (RIP-Seq, CLIP-Seq, ribosomal profiling) by aitor • 0
Hi everyone. I have a RIP-Seq analysis with 3 conditions and 3 assays (IP, IgG and Input for each of them). 4 replicates for each conditio…
Votes
Comment: Can't post a question?
Answer: Limma - Complex 2-way multi-level contrast with paired samples
Answer: [ChIP-seq] DESeq2 on counts matrix from union set of called peaks
Help with creation of an OrgDB package and conduction of a bioinformatical analysis of gene expression
Answer: Loading Ensembl 98 EnsDb from Annotation Hub fails with database disk image malf
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