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0
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3
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458
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How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata
Bioconductor
5 months ago
Abiologist
• 0
0
votes
0
replies
288
views
Understanding Differentially Abundant Neighbourhood Identification
miloR
5 months ago
Dario Strbenac
★ 1.5k
0
votes
2
replies
707
views
Species level information couldn't find with DADA2 bioconductor package
Metagenomics
dada2
MicrobiomeData
5 months ago • updated 3 months ago
abhisek001
• 0
3
votes
1
reply
916
views
Difference between enrichGO results and Enrichr website results
Pathways
GO.db
clusterProfiler
updated 5 months ago by
Guido Hooiveld
★ 4.1k • written 5 months ago by
adrip
▴ 10
0
votes
0
replies
324
views
Cell type deconvolution of RNAseq data- Create signature matrix of cells
deconvolution
rnaseqGene
RNAseq
5 months ago
JG13
• 0
0
votes
0
replies
350
views
Blacklist regions on DBA object (diffbind)
DiffBind
chipseq
5 months ago
gamma.jian
▴ 10
0
votes
0
replies
241
views
Structural Variant Format Converted for BRASS Format
StructuralVariantAnnotation
5 months ago
Dario Strbenac
★ 1.5k
0
votes
0
replies
220
views
Differential Gene Wrapper for Propotion of Detected
scran
5 months ago
Dario Strbenac
★ 1.5k
0
votes
9
replies
725
views
Research Project - Expanding search funtionality on the GEO database
GEOquery
GEO
5 months ago
gallantk5
• 0
0
votes
0
replies
295
views
Filtering the genesets for fgseaMultiLevel
msigdb
fgsea
msig
5 months ago
Tanvi
• 0
0
votes
0
replies
327
views
ligand-receptor-interactions for bulk RNAseq in R
decoupleR
5 months ago
silvaesilva.da
• 0
0
votes
0
replies
310
views
BiomaRt attribute "description" doesn't return NCBI's gene summary anymore
biomaRt
5 months ago
Reese
• 0
0
votes
0
replies
222
views
Scoreplot for OPLS
splots
5 months ago
devarti.mahakalkar
• 0
0
votes
4
replies
593
views
Single Cell Experiment : Differential Expression "List of length 0" - Help!
DifferentialExpression
scran
scater
SingleCellExperiment
edgeR
5 months ago
vohara4
• 0
0
votes
0
replies
227
views
Error in drawHeatmap function
GeneOverlap
heatmaps
5 months ago
Johanna
• 0
1
vote
4
replies
651
views
error loading collectTRI regulon
decoupleR
OmnipathR
5 months ago
silvaesilva.da
• 0
0
votes
2
replies
580
views
Combining analysis of EPICv1 and EPICv2 using SeSAMe package
sesameData
EPICv2
EPICv1
updated 7 weeks ago by
zhouwanding
▴ 20 • written 5 months ago by
archibold.mposhi
• 0
0
votes
1
reply
526
views
When I tried to use the functions from the celldex package to fetch information, I encountered the following error. How can I resolve this?"
celldex
SingleR
updated 5 months ago by
ATpoint
★ 4.6k • written 5 months ago by
1319244258
• 0
0
votes
0
replies
283
views
Amplican doesn't recognize forward reads fast q file
amplican
5 months ago
landenshanie
▴ 40
0
votes
3
replies
411
views
STRINGdb server response time for mapping
mapping
serverresponsetime
STRINGdb
updated 6 months ago by
damian.szk
▴ 110 • written 6 months ago by
roberto.pellegrino
• 0
1
vote
3
replies
474
views
STRINGdb v.2.16.4 does not render the plot [libpng error: Not a PNG file]
STRINGdb
updated 5 months ago by
damian.szk
▴ 110 • written 6 months ago by
h.valipour.k
• 0
0
votes
0
replies
216
views
does TMixClust recognise biological replicates
TMixClust
6 months ago
ta_awwad
▴ 10
0
votes
0
replies
325
views
How to fix fix $PnR in flowCore
flowCore
updated 6 months ago by
James W. MacDonald
67k • written 6 months ago by
Elle
• 0
0
votes
0
replies
257
views
Error in xj[i] : invalid subscript type 'list' when running jDUreport on Aspli
ASpli
updated 6 months ago by
James W. MacDonald
67k • written 6 months ago by
Randall
• 0
0
votes
0
replies
260
views
EuroBioC2024 Registration is Open!
Community
Conference
Bioconductor
EuroBioC2024
6 months ago
Maria Doyle
▴ 90
0
votes
0
replies
253
views
Message 'invalid data format' on impute.MAR function
impute
6 months ago
marcosdossantosferreira
• 0
0
votes
1
reply
621
views
scds creates sparse->dense coercion
scds
6 months ago • updated 4 months ago
Lluís Revilla Sancho
▴ 760
0
votes
0
replies
211
views
Import_picrust2 question
microbiomeMarker
6 months ago
Jay
• 0
0
votes
0
replies
269
views
gmapR source package contains x86_64 binaries
gmapR
6 months ago
Tom Lin
• 0
0
votes
1
reply
465
views
conumee with Infinium MethylationEPIC v2.0
conumee
updated 5 months ago by
idatta1
• 0 • written 6 months ago by
Maximus
• 0
1
vote
9
replies
1.1k
views
Cannot install oligo on Fedora
oligo
source
Install
6 months ago • updated 5 months ago
Guido Hooiveld
★ 4.1k
0
votes
6
replies
1.3k
views
Using featureCounts with SAF annotation file gives "Error: only GTF files contain additional attributes"
RNASeq
Rsubread
6 months ago
atan
• 0
0
votes
1
reply
391
views
Problem in execuation of filterAndTrim command in DADA2
Bioconductor
dada2
6 months ago • updated 5 months ago
abhisek001
• 0
0
votes
0
replies
235
views
Conditional analysis
GENESIS
6 months ago
SuperDad
• 0
0
votes
0
replies
402
views
FindOverlaps, makeVennDiagram and "others"
ATACSeq
peaks
ATAC
ChIPpeakAnno
6 months ago
Raghad
• 0
0
votes
0
replies
12
views
Spam:
Understanding Laser Hair Removal?
healthyControlsPresenceChecker
6 months ago
shahrozimmac
0
0
votes
0
replies
220
views
Processing of curatedmetagenomics
curatedMetagenomicData
6 months ago
Edward
• 0
0
votes
0
replies
287
views
scRNA-seq data trained model can be used for predictions on bulk RNA-seq data?
RNASeq
scRNAseq
6 months ago
Bibi
• 0
0
votes
0
replies
272
views
Minor allele data from grch38 giving NAs from getBM ?
BioMartGOGeneSets
allele_freq
biomaRt
getBM
6 months ago
Abiologist
• 0
0
votes
3
replies
602
views
STRINGdb : error with string_db$plot_network()
STRINGdb
updated 6 months ago by
damian.szk
▴ 110 • written 6 months ago by
ninidea
• 0
0
votes
0
replies
268
views
determine k during RUVSeq
RUVSeq
RUVnormalize
6 months ago
Ειρήνη
• 0
0
votes
1
reply
358
views
ReactomeGSA for RNASeq
ReactomeGSA
BatchEffect
RNASeqData
updated 12 weeks ago by
jg
▴ 20 • written 6 months ago by
Shaimaa Gamal
• 0
0
votes
0
replies
16
views
Spam:
Unveiling Unmatched Best Custom Patches
SIMAT
6 months ago
oliverelijhan
0
0
votes
0
replies
268
views
ChIPseeker peak_Profile_Heatmap color palette
ChIPseeker
6 months ago
Anton01
• 0
0
votes
0
replies
241
views
GAGE results interpretation with gene-foldchange as input for cases of all-negative foldchange
GO
KEGG
gage
pathview
6 months ago
danalvoronov
▴ 10
0
votes
0
replies
250
views
query regarding how to apply WGCNA on replicates
replicatesRNAseq
WGCNA
6 months ago
k200987
• 0
0
votes
0
replies
246
views
Difference in Contrast in DiffBind
DiffBind
6 months ago
user_bioinfo
• 0
0
votes
2
replies
359
views
QSEA- Extraction of Normalized methylation across the samples
qsea
ngsReports
correlation
written 6 months ago by
Researcher
• 0
1
vote
2
replies
630
views
How can I create a eigencorplot of pca created from deseq2 object with PCAtools
DESeq2
eigencorplot
PCAtools
6 months ago
BioinfGuru
▴ 70
0
votes
2
replies
366
views
Problem finding certain variables when importing a public database GSE73103
GSEABase
GenomicDistributionsData
6 months ago
Yveto
• 0
1,000 results • Page
3 of 20
Recent ...
Replies
Answer: scuttle::perFeatureQCMetrics runs very slow for big scRNA-seq data
by
Aaron Lun
★ 28k
You don't mention how your matrix data is being represented, but if it's a file-backed matrix (e.g., `HDF5Matrix` or one of its variants, b…
Comment: contrast matrix design for a continuous variable
by
dtzhu337
• 0
Thank you, Gordon. X is time splines for time point, and yes, it's needed. However, I was also thinking to incorporate time point with se…
Answer: contrast matrix design for a continuous variable
by
Gordon Smyth
52k
Yes, the design and contrasts are correct. Your analysis is also adjusted for covariates defined by X, which I assume is what you want to …
Comment: fail to use addPerROIQC in Rmd
by
liu.n
• 0
That's odd. So it can run successfully within markdown but would be failed when knitting?
Comment: fail to use addPerROIQC in Rmd
by
joseph.joonsang
• 0
> dim(spe) [1] 19962 425
Votes
Answer: contrast matrix design for a continuous variable
A: What's the difference between p.adjust and qvalue?
Answer: DESeq2- merging technical vs biological replicates
Comment: What type of counts data to import for performing Isoform analysis in edgeR
Answer: What type of counts data to import for performing Isoform analysis in edgeR
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mikat
• 0
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joseph.joonsang
• 0
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Hans-Ulrich Klein
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shepherl
4.1k
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