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2
votes
2
replies
656
views
fgsea stuck in an infinite loop in the middle of the run
GSEABase
fgsea
msigdb
GeneSetEnrichment
11 weeks ago
Assa Yeroslaviz
★ 1.5k
0
votes
2
replies
360
views
ReactomeGSA adjustment for confounding variables
BiologicalQuestion
ReactomeGSA
BatchEffect
written 11 weeks ago by
Shaimaa Gamal
• 0
0
votes
0
replies
315
views
Z-score Interpretation across components
MAST
11 weeks ago
Greg
• 0
1
vote
2
replies
355
views
Review process for delivering R packages
Bioconductor
11 weeks ago
XFWu
• 0
0
votes
0
replies
235
views
BioCAsia 2024 Abstract Deadline - August 26th
BioCAsia2024
Community
Conference
Bioconductor
3 months ago
Maria Doyle
▴ 90
0
votes
0
replies
226
views
DiffBind - observation that the default union overlap is actually a gap of 1 bp
DiffBind
3 months ago
Ian D.
▴ 70
0
votes
1
reply
393
views
installing "org.Hs.eg.db",go error
org.Hs.eg.db
updated 3 months ago by
shepherl
4.1k • written 3 months ago by
聪
• 0
0
votes
0
replies
254
views
Are equal whisker lengths important in an RLE plot?
EDASeq
EDA
3 months ago
BioinfGuru
▴ 70
0
votes
2
replies
451
views
DMPs enrichment for MOUSE DNA methylation array
minfi
mCSEA
missme
missMethyl
updated 3 months ago by
nrenke
• 0 • written 3 months ago by
Lucie
• 0
0
votes
2
replies
303
views
FlowSOM library requires igraph but igraph does not install
FlowSOM
written 3 months ago by
Priyanka
• 0
0
votes
0
replies
238
views
hichip fragments extraction chip seq
ChIPSeqData
interact
GenomicRanges
HiC
3 months ago
user_bioinfo
• 0
0
votes
1
reply
264
views
DiffBind remove Unplace Chromosome (chrUn)
DiffBind
3 months ago
mdidish
▴ 10
0
votes
0
replies
218
views
DiffBind dba.plotprofile y-axis range
DiffBind
3 months ago
Tara
• 0
0
votes
0
replies
219
views
proActiv-promoter analysis
proActiv
Transcriptomics
3 months ago
wang.xiangyu
• 0
0
votes
3
replies
325
views
How to combine multiple lists of cytoframes/cytocq data objects into one
flowWorkspace
cytocq
updated 3 months ago by
SamGG
▴ 350 • written 3 months ago by
anders.tondell
▴ 30
0
votes
0
replies
238
views
EuroBioC2024 Flashtalks & Birds-of-a-Feather Sessions - submissions open!
Community
Conference
Bioconductor
EuroBioC2024
3 months ago
Maria Doyle
▴ 90
0
votes
4
replies
492
views
Failed to install geneLenDataBase
geneLenDataBase
ChAMP
updated 3 months ago by
shepherl
4.1k • written 3 months ago by
Fang
• 0
4
votes
4
replies
812
views
NAs in fgseaMultilevel
fgsea
updated 3 months ago by
alserg
▴ 280 • written 3 months ago by
Danté
• 0
0
votes
8
replies
693
views
DiffBind full library size not reliable
DiffBind
Reads
MACS2
FullLibSize
updated 3 months ago by
Rory Stark
★ 5.2k • written 3 months ago by
Marianna
▴ 20
0
votes
1
reply
401
views
Basic import of seqFISH from Spatial Genomics genePS into SpatialExperiment
seqFISH
SpatialExperiment
3 months ago
Matthew Thornton
▴ 380
0
votes
3
replies
1.4k
views
How to plot gene names in Gviz plotTracks and get the ideogram track to work (US-based)?
gviz
Saccharomyces_cerevisiae
Gviz
ideogram
updated 3 months ago by
Maryna
• 0 • written 14 months ago by
Michael
• 0
0
votes
0
replies
406
views
Sigmatrix should not contain missing values error in deconvolution using granule
granulator
3 months ago
louis.der.hammer
• 0
0
votes
0
replies
345
views
Error in serialization
scDblFinder
BiocParallel
3 months ago
Lluís Revilla Sancho
▴ 760
0
votes
1
reply
447
views
Retrieving Package Metadata from Bioconductor API: Versions and Dependencies
metaMSdata
updated 3 months ago by
shepherl
4.1k • written 4 months ago by
Sadman
• 0
0
votes
0
replies
347
views
Using variantAnnotation to put together genotype and consequence information
variantAnn
VariantAnnotation
4 months ago
ramiro.barrantes
▴ 10
0
votes
0
replies
263
views
ASICS to process NMR spectra
ASICS
4 months ago
KONG ZHI XIAN
• 0
0
votes
0
replies
260
views
MAST package: Most appropriate way to perform lrTest for effect of factor with multiple levels in pairwise manner?
MAST
4 months ago
Kelly
• 0
4
votes
9
replies
961
views
Get_interactions is giving the combined score
STRINGdb
updated 3 months ago by
McKayl
• 0 • written 4 months ago by
nkavabhrath03
▴ 20
0
votes
0
replies
292
views
How to use GAGE with my own metagenomic KOFams data
kegg.gsets
gageData
gage
KEGG
4 months ago
cereyredondo
• 0
0
votes
1
reply
332
views
output from RAIN doesn't look rhythmic
rain
updated 4 months ago by
ATpoint
★ 4.5k • written 4 months ago by
cereyredondo
• 0
0
votes
0
replies
381
views
Linear Mixed Model for Differential Gene Expression in Single-Cell RNAseq with Batch Effects
lmer
MAST
DifferentialExpression
4 months ago
nhaus
▴ 70
3
votes
4
replies
796
views
Differences in Limma and Dreamlet random effects from confounded dataset
limma
dreamlet
4 months ago
jcollier
• 0
0
votes
0
replies
390
views
ChAMP analysis Error: Meth Matrix and UnMeth Matrix seems not paried correctly AND incomplete final line
MethylationArray
methylationArrayAnalysis
ChAMP
4 months ago
Mathu
• 0
1
vote
0
replies
275
views
RUVg spike-in assumption global expression
RUVSeq
RUVnormalize
4 months ago
Erdi
▴ 10
0
votes
0
replies
5
views
Spam:
Ground Handling Companies in Maldives
alabaster.schemas
db0
4 months ago
vvipflight01
0
0
votes
0
replies
11
views
Spam:
How do professional SEO services enhance user experience on my website?
metaMSdata
4 months ago
Steven
0
0
votes
0
replies
268
views
How to perform a methylation analyisis from beta values matrix and pd.csv
minfiDataEPIC
4 months ago
yemeijie123
• 0
0
votes
0
replies
252
views
Error in bam loading in getUniqueCleavageEvents() in GUIDEseq package
GUIDEseq
4 months ago
StayM
• 0
0
votes
0
replies
41
views
Spam:
GenOMICC DNA biobank
alabaster.schemas
db0
4 months ago
Jolka
0
0
votes
0
replies
254
views
EPIC v2 annotation and BigWig
EPICv2manifest
IlluminaHumanMethylationEPICv2anno.20a1.hg38
4 months ago
MajaVu
• 0
0
votes
0
replies
324
views
Improving Gene Matching for CIBERSORT Deconvolution with Monaco Reference Matrix in Bulk RNA-Seq
DeconRNASeq
AnnotationDbi
org.Hs.eg.db
4 months ago
chunglee13
• 0
0
votes
4
replies
724
views
Trouble Installing DADA2 (warning: R new user)
dada2
updated 4 months ago by
shepherl
4.1k • written 4 months ago by
schott01
• 0
0
votes
0
replies
316
views
Difference in Predictive component of PLS and OPLS Model
Metabolomics
plotGrouper
Bioconductor
ropls
PLSDAbatch
4 months ago
devarti.mahakalkar
• 0
0
votes
0
replies
347
views
Problem with MethylAid ("Cannot get Manifest object for an 'Unknown' array") and Epicv2
minfi
EPICv2manifest
MethylAid
4 months ago
pcibin
• 0
0
votes
1
reply
370
views
Conumee with EPICv2 Segment function
Conu
conumee
updated 3 months ago by
Simon
• 0 • written 4 months ago by
idatta1
• 0
0
votes
1
reply
336
views
single excel file containing methylation beta values does not get loaded in ChAMP
ChAMP
updated 4 months ago by
Basti
▴ 780 • written 4 months ago by
tahirah.yasmin2014
• 0
1
vote
2
replies
344
views
How to get the DMR?
ENmix
4 months ago
Alex
• 0
0
votes
0
replies
200
views
Remove Control Probes from Affymetrix Human Gene 1.0 ST Array probeset version
AffymetrixDataTestFiles
AffymetrixChip
4 months ago
drexjaramel
• 0
0
votes
3
replies
446
views
How to search Pubmed Central or other fulltext literature base using regex?
metaMSdata
Bioconductor
4 months ago
Abiologist
• 0
0
votes
0
replies
278
views
Understanding Differentially Abundant Neighbourhood Identification
miloR
4 months ago
Dario Strbenac
★ 1.5k
1,000 results • Page
2 of 20
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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51k
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67k
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