0
votes
0
replies
23
views
HilBertVis install error
HilbertVis ChIPseqR
12 hours ago chase.mateusiak • 0
0
votes
0
replies
29
views
BiocNeighbours Utility for k-Nearest Neighbour Classification
Classification BiocNeighbors
1 day ago Dario Strbenac ★ 1.5k
0
votes
1
reply
72
views
eRNAs count
RNASeq DESeq2
updated 2 days ago by ★ 4.5k • written 2 days ago by • 0
0
votes
0
replies
86
views
WGCNA module preservation using only adjacency matrix
WGCNA
7 days ago yang1641 • 0
0
votes
0
replies
42
views
ChemmineOB avaiable for macOS Binary (arm64)?
ChemmineOB
7 days ago Simone • 0
0
votes
2
replies
252
views
installation error for BiocNeighbors package
BiocNeighbors
7 days ago 育 • 0
0
votes
0
replies
81
views
Errors trying to load EPIC v2 data in ChAMP
ChAMP ChAMPdata
9 days ago elgomez • 0
0
votes
1
reply
162
views
makeContrastsDream for Interaction
limma DifferentialExpression variancePartition dream
12 days ago • updated 6 days ago abadgerw • 0
0
votes
1
reply
270
views
Merge Replicates vs Mixed Model
limma DifferentialExpression variancePartition dream
12 days ago • updated 6 days ago abadgerw • 0
0
votes
0
replies
112
views
ChIP peaks comparison
ChIPSeqData genomes ChIPSeq
15 days ago user_bioinfo • 0
0
votes
0
replies
108
views
Diffbind: Cut&Run: E-coli spike-in
Normalization DiffBind
16 days ago kim • 0
0
votes
0
replies
101
views
Help using reduceSimMatrix with a custom annotation
AnnotationHub GOSemSim rrvgo
16 days ago daccar98 • 0
0
votes
0
replies
118
views
Combining two closely related bacterial annotated genomes to analyze as one pooled group
genomes RNASeq
16 days ago brayas13 • 0
0
votes
0
replies
101
views
export processed data from flowploidy
flowPloidy
20 days ago Zdenek Skala • 0
0
votes
0
replies
67
views
Filtering Steps for proActiv Analysis
Transcriptomics proActiv
22 days ago LuciaNhu • 0
0
votes
0
replies
96
views
diffbind covariates
DiffBind ATACSeq
updated 24 days ago by 42k • written 25 days ago by ▴ 220
0
votes
0
replies
72
views
MOFA2: Confidence Intervals // Unvertainty estimates for MOFA model
MOFA2
25 days ago mario_de_manner • 0
0
votes
0
replies
74
views
cbind for multiple SpatialExperiment takes so much time
SpatialExperiment SingleCellExperiment
4 weeks ago Ibrahim • 0
0
votes
0
replies
98
views
Downloading Metagenomic Data with Higher Taxonomic Units
curatedMetagenomicData
4 weeks ago ua51601 • 0
0
votes
0
replies
84
views
DiffBind subset replicates
DiffBind
5 weeks ago Haiping • 0
0
votes
0
replies
109
views
Rsubread - sublong function
pacbio sublong Rsubread
5 weeks ago thomas.heigl.ibk • 0
0
votes
0
replies
106
views
when FOLD>0, which group of sampls increased?
BASiCS
5 weeks ago Jeffcgen2000 • 0
0
votes
0
replies
116
views
Paired splsda
mixOmics
6 weeks ago michelafrancesconi8 • 0
0
votes
0
replies
134
views
Background normalization of Diffbind dba.normalize
Normalization DiffBind
6 weeks ago Young Boqin • 0
0
votes
0
replies
146
views
DMRcate pcutoff setting
EpicV2 DMRcate
6 weeks ago kitzhu • 0
0
votes
0
replies
142
views
[maser] Why does maser coverage filtering ignore skipping counts of an alt. splicing analysis?
rMATS alternativesplicing maser R
6 weeks ago Anke • 0
1
vote
1
reply
277
views
WGCNA
DEGselection RNASeqData WGCNA
updated 6 weeks ago by ▴ 760 • written 6 weeks ago by • 0
0
votes
1
reply
181
views
Unevaluated error in ChIPQC combined with BiocParallel
BiocParallel ChIPQC
written 6 weeks ago by • 0
2
votes
6
replies
841
views
miRTarRnaseq library
miRNATarget mirTarRnaSeq
8 months ago • updated 6 weeks ago María Calvo • 0
0
votes
0
replies
143
views
Setting ylims in bam coverage plot and assigning compound sashimi numbers to overlay plots
Coverage Gviz sashimi
6 weeks ago Marco • 0
1
vote
1
reply
225
views
Normalization RNA-seq for multiple plates
Normalization DESeq2 RNASeqData edgeR
updated 7 weeks ago by ★ 4.5k • written 7 weeks ago by • 0
1
vote
1
reply
579
views
Convert HGVS Representation back to Reference Genome Coordinates
GA4GHclient
updated 6 weeks ago by ▴ 160 • written 7 weeks ago by ★ 1.5k
0
votes
0
replies
208
views
Assistance with Bulk RNA-seq Data Analysis Including Random Effect (`duplicateCorrelation` from `limma`)
limma RNAseq123
7 weeks ago tim.meese • 0
0
votes
1
reply
257
views
BiomaRt - improved access to Ensembl ?
biomaRt
updated 7 weeks ago by ★ 6.6k • written 7 weeks ago by • 0
0
votes
0
replies
161
views
Deprecated Gates- tailgate
openCyto
8 weeks ago ztflaten • 0
0
votes
0
replies
169
views
Getting error while running GenomicPlot
GenomicPlot
8 weeks ago Lucky • 0
0
votes
0
replies
179
views
WGCNA: Problem with selecting soft threshold
biologicalnetworkanalysis genomes RNA-Seq co-expression wgcna
8 weeks ago Fernanda • 0
0
votes
0
replies
152
views
package rpx, unable to download any dataset (PRIDE, MassIVE, iProX)
rpx PXDataset RforProteomics
8 weeks ago Jane_Huang • 0
0
votes
0
replies
296
views
Generating Boxplots for Gene Expression by CellType in NanoStringGeoMXSet
GeomxTools SpatialDecon GeoMxWorkflows
8 weeks ago Cinque • 0
0
votes
0
replies
197
views
Trying to understand basic DiffBind usage
ChIPSeq DiffBind
9 weeks ago Alejandro • 0
0
votes
0
replies
234
views
modelGeneVar in MulticoreParam: wrong args for environment subassignment
BiocParallel scran BiocParall
9 weeks ago Lluís Revilla Sancho ▴ 760
0
votes
0
replies
245
views
Mark seleced variables in the x-loading plot
OPLS genomes Proteomics
9 weeks ago Ragnhild • 0
0
votes
1
reply
501
views
Issue Installing Biostrings Package: gcc Compilation Errors
Biostrings packageinstallation
updated 9 weeks ago by ▴ 60 • written 9 weeks ago by • 0
0
votes
1
reply
255
views
WGCNA Choosing soft threshold power below R^2 0.8
WGCNA
updated 9 weeks ago by ▴ 760 • written 9 weeks ago by • 0
0
votes
5
replies
685
views
Rsubread alignment crashes at 35%, valgrind indicates invalid writes
Rsubread
updated 6 weeks ago by ▴ 450 • written 10 weeks ago by • 0
0
votes
2
replies
383
views
concentration tables suitable as input for new packages?
Bioconductor
10 weeks ago katja.danielzik • 0
0
votes
1
reply
273
views
Ideal approach to adjust for covariates for WGCNA
WGCNA wgcna
updated 10 weeks ago by 67k • written 10 weeks ago by • 0
0
votes
5
replies
610
views
ı cant install clusterprofiler on my Ubuntu 20.04.6 LTS
Bioconductor clusterProfiler
updated 8 weeks ago by ▴ 760 • written 10 weeks ago by • 0
0
votes
1
reply
287
views
ensemblVEP deprecation and how to reproduce
VariantAnnotation
updated 10 weeks ago by 6.7k • written 10 weeks ago by • 0
0
votes
0
replies
300
views
Problem merging metadata and feature-table before analysing LEfSe on R
microbiomeDataSets differential-abundance
10 weeks ago 샤니쿠마리 • 0
1,000 results • Page 1 of 20
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Answer: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights by efsane_kral2000 • 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR by Gordon Smyth 51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data by Melisa Tecik • 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data by James W. MacDonald 67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
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Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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