0
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0
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40
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ChAMP.DMR error - Error in makeGenomicRatioSetFromMatrix
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updated 1 day ago by 67k • written 2 days ago by • 0
0
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1
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112
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Errors running learn.bn function from Pigengene in windows environment
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0
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Spam: Best Hotels In Maui
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10 days ago 2zrcj3448p 0
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7
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DESeq2: Gene is DEG in one experiment but not in the other depite similar baseMean, L2FC, ...
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updated 10 days ago by • 0 • written 11 days ago by • 0
0
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0
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82
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Confidence interval contains 0 but p<0.05
MAST
16 days ago Adelyn • 0
0
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75
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Pathway abundance data from Curatedmetagenomics
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17 days ago Edward • 0
1
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4
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313
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pathview - multiple states
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17 days ago • updated 16 days ago Philippine • 0
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5
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fail to use addPerROIQC in Rmd
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updated 18 days ago by • 0 • written 18 days ago by • 0
0
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5
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345
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how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K?
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18 days ago • updated 1 day ago xiaofeiwang198266 • 0
0
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1
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159
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rrvgo::calculateSimMatrix() error
rrvgo
updated 19 days ago by • 0 • written 22 days ago by • 0
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0
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115
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Lipidomics Barplot: raw values or non-log, lipidr-normalized values?
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25 days ago David R ▴ 90
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1
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146
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WGCNA with TPM tables
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updated 28 days ago by ★ 4.6k • written 28 days ago by • 0
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138
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eRNAs count
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updated 4 weeks ago by ★ 4.6k • written 4 weeks ago by • 0
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WGCNA module preservation using only adjacency matrix
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5 weeks ago yang1641 • 0
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68
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ChemmineOB avaiable for macOS Binary (arm64)?
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5 weeks ago Simone • 0
0
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2
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339
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installation error for BiocNeighbors package
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5 weeks ago 育 • 0
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0
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135
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Errors trying to load EPIC v2 data in ChAMP
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1
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3
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424
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makeContrastsDream for Interaction
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Merge Replicates vs Mixed Model
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Diffbind: Cut&Run: E-coli spike-in
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6 weeks ago kim • 0
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Combining two closely related bacterial annotated genomes to analyze as one pooled group
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6 weeks ago brayas13 • 0
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export processed data from flowploidy
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7 weeks ago Zdenek Skala • 0
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Filtering Steps for proActiv Analysis
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7 weeks ago LuciaNhu • 0
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diffbind covariates
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MOFA2: Confidence Intervals // Unvertainty estimates for MOFA model
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7 weeks ago mario_de_manner • 0
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cbind for multiple SpatialExperiment takes so much time
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8 weeks ago Ibrahim • 0
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DiffBind subset replicates
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9 weeks ago thomas.heigl.ibk • 0
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10 weeks ago Jeffcgen2000 • 0
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0
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Paired splsda
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10 weeks ago michelafrancesconi8 • 0
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10 weeks ago Young Boqin • 0
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[maser] Why does maser coverage filtering ignore skipping counts of an alt. splicing analysis?
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1
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341
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WGCNA
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2
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8
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11 weeks ago Marco • 0
1
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1
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254
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Convert HGVS Representation back to Reference Genome Coordinates
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12 weeks ago tim.meese • 0
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updated 12 weeks ago by ★ 6.6k • written 12 weeks ago by • 0
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Deprecated Gates- tailgate
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12 weeks ago ztflaten • 0
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Getting error while running GenomicPlot
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12 weeks ago Lucky • 0
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WGCNA: Problem with selecting soft threshold
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3 months ago Fernanda • 0
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3 months ago Jane_Huang • 0
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0
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3 months ago Cinque • 0
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1,000 results • Page 1 of 20
Recent ...
Replies
Answer: Cross-validation with multiple control subgroups in limma by Gordon Smyth 52k
limma doesn't do cross-validation or resampling. Like most classical linear modeling procedures in statistics, limma uses a statistical mod…
Comment: Issues with seqlevelsStyle when making custom txdb objects for genomes/annotatio by Robert Castelo ★ 3.4k
Hi Hervé, thank you very much for your input into how to properly build and manage TxDb objects. gDNAx has two main inputs, one or more BAM…
Comment: Biostrings: Error writing long reads (>200 kbps) with writeQualityScaledXStringS by Aidan ▴ 60
Quick update: this is fixed in a branch awaiting PR to Biostrings (https://github.com/Bioconductor/Biostrings/pull/122). Should be in `deve…
Answer: Can DESeq2's design compensate for sequencing experimental design shortcomings? by Michael Love 43k
For statistical analysis plans, I recommend working with a local statistician or someone familiar with linear models in R. I have to reserv…
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by xiaofeiwang198266 • 0
Thanks for your reply!
Votes
C: edgeR and lack of counts ID on CPM matrix
A: DESeq2 Following RSEM
A: importing RSEM data into DESeq2
A: Expected counts from RSEM in DESeq2
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