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1 day ago cftattersfield • 0
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4 days ago • updated 1 day ago Quang NN ▴ 10
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4 days ago • updated 1 day ago Quang NN ▴ 10
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7 days ago • updated 5 days ago Blandine • 0
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Is there a way to do DEG analysis across two batches sharing one sample only?
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8 days ago georgeyu703 • 0
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1
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12 days ago • updated 8 days ago ja.garcia • 0
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173
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updated 11 days ago by 43k • written 12 days ago by • 0
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11 days ago Silvia • 0
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12 days ago xiaofeiwang18266 ▴ 50
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0
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112
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Unknown gene transcripts after annotatr
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updated 14 days ago by 67k • written 15 days ago by • 0
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1
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99
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16 days ago • updated 15 days ago nurkenber • 0
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16 days ago GJ • 0
0
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1
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96
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promoters_txdb <- promoters(txdb, upstream = 2000) is not 2000
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updated 16 days ago by 67k • written 16 days ago by ▴ 20
0
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0
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1
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156
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updated 16 days ago by 4.1k • written 18 days ago by • 0
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2
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375
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21 days ago • updated 18 days ago sindhuri • 0
46,305 results • Page 1 of 927
Recent ...
Replies
Answer: I am having issues with bowtie2_build by James W. MacDonald 67k
Is proof.fa an actual FASTA file? Have you tried using the demo data that comes with the package? See the [vignette under Build Bowtie Inde…
Answer: DEG analysis across multiple timepoints, treatments and tissues by Michael Love 43k
Yes, if you think the entire time course can be modified by tissue effects then you would include another set of interaction terms. I re…
Comment: How to visualize these pathways using pathview by Guido Hooiveld ★ 4.1k
FYI: a similar, if not identical issue has been reported before (`pathview` has problems visualizing some pathways, but not all). You likel…
Comment: Why select top highly expressed genes based on normalized counts, but then plot by Quang NN ▴ 10
I see. Thank you ATpoint!
Comment: how should I apply "cpg.annotate" to TCGA methylation data in hg38 for HM450K? by Prakash Sah • 0
Thanks James!
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Answer: Selection of correct coefficients or contrasts in DESeq2
Answer: Selection of correct coefficients or contrasts in DESeq2
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