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Job:
Post-Doctoral Research Fellow - Cancer Immunotherapy
JobPosting
5 hours ago
Fred Hutch (Recruiting)
▴ 40
0
votes
2
replies
281
views
Unlocking Potential: NURS FPX Strategies and Insights
levi
NURSFPX
ragene20sttranscriptcluster.db
ssrch
updated 6 hours ago by
efsane_kral2000
• 0 • written 7 months ago by
vaxahey107
• 0
0
votes
1
reply
61
views
Differene between the Wald and LRT test for time-series gene expression data
DESeq2
updated 9 hours ago by
James W. MacDonald
67k • written 12 hours ago by
Denise
• 0
0
votes
0
replies
20
views
HilBertVis install error
HilbertVis
ChIPseqR
9 hours ago
chase.mateusiak
• 0
2
votes
3
replies
127
views
Is it recommended to analyze different tissues together when using edgeR
DifferentialExpression
edgeR
updated 6 hours ago by
Gordon Smyth
51k • written 20 hours ago by
Lars Roed
• 0
0
votes
0
replies
27
views
BiocNeighbours Utility for k-Nearest Neighbour Classification
Classification
BiocNeighbors
1 day ago
Dario Strbenac
★ 1.5k
1
vote
4
replies
263
views
Handling Epic Array Data
minfi
1 day ago • updated 8 hours ago
Melisa Tecik
• 0
1
vote
3
replies
263
views
Allele frequencies for ALL alleles of one SNP ?
Bioconductor
7 days ago • updated 11 hours ago
Abiologist
• 0
2
votes
2
replies
218
views
preprocessIllumina error with EPICv2 array
minfi
EPICv2manifest
2 days ago • updated 1 day ago
Rakesh
• 0
0
votes
2
replies
107
views
List of DEGs belonging to an Agilent-single color microarray experiment using Limma package
limma
2 days ago • updated 1 day ago
giulia.gentile
• 0
0
votes
3
replies
91
views
CleanUpRNAseq with a GTF that is missing mitochondria annotation data
CleanUpRNAseq
updated 1 day ago by
Haibo Liu
• 0 • written 2 days ago by
rcreed
• 0
1
vote
1
reply
94
views
UniProt.ws query loading indefinitely
UniProt.ws
updated 1 day ago by
James W. MacDonald
67k • written 1 day ago by
Patrick
• 0
0
votes
2
replies
73
views
Identifying potentially associated gene set to drug response using GSVA
drug
RNASeq
GSVA
written 2 days ago by
Kent
• 0
0
votes
3
replies
206
views
How to get The evolutionary conservation scores for lncRNAs by the phastCons100way.UCSC.hg38 (3.7.1) R package
txdbmaker
GenomicScores
phastCons100way.UCSC.hg38
GenomicFeatures
4 days ago • updated 15 hours ago
rania.alanany
• 0
0
votes
2
replies
138
views
Are unequal sample sizes in differential gene expression (DGE) analysis a problem for edgeR, DESeq2, and NOISeq? Could you give me some advice on how…
RNA
RNASeqPower
DEGseq
updated 22 hours ago by
Gordon Smyth
51k • written 2 days ago by
Jonathan
• 0
4
votes
2
replies
349
views
Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Elastic Net): Best practices?
limma
limma-voom
updated 2 days ago by
Gordon Smyth
51k • written 2 days ago by
Ahdee
▴ 50
1
vote
5
replies
259
views
Package needs internet access
BSgenome
BSgenome.Hsapiens.UCSC.hg38
Offline
updated 1 day ago by
James W. MacDonald
67k • written 2 days ago by
firestar
▴ 20
0
votes
2
replies
96
views
Limma Interaction Effect with Covariates
limma
DMRcate
2 days ago
kitzhu
• 0
2
votes
1
reply
103
views
Using Affymetrix Custom Array
ArrayExpress
makecdfenv
AffymetrixChip
gcrma
GeneExpression
updated 2 days ago by
James W. MacDonald
67k • written 2 days ago by
Piotr.Keller
• 0
1
vote
2
replies
160
views
Harmonizing Gene Annotations for Meta-Analysis of GSE68183 and GSE80178
GEOquery
updated 2 days ago by
James W. MacDonald
67k • written 2 days ago by
Dhite
• 0
0
votes
1
reply
69
views
eRNAs count
RNASeq
DESeq2
updated 2 days ago by
ATpoint
★ 4.5k • written 2 days ago by
Irene
• 0
0
votes
0
replies
42
views
Job:
Postdoctoral position in Computational Epigenomics of Aging and Cancer
Aging
Epigenetics
JobPosting
Postdoctor
Cancer
3 days ago
xiaolong
• 0
0
votes
1
reply
333
views
DESeq2 rerun returns different results
DESeq2
updated 5 days ago by
ATpoint
★ 4.5k • written 6 days ago by
wl1111
• 0
2
votes
3
replies
787
views
[How to construct a model.matrix ]
limma
modelmatrix
updated 3 days ago by
Gordon Smyth
51k • written 7 days ago by
kyj2226
• 0
0
votes
1
reply
165
views
Is my time course analysis with DESeq2 valid?
GeneExpression
DESeq2
TimeCourse
updated 6 days ago by
Michael Love
42k • written 7 days ago by
Jason
• 0
6
votes
6
replies
3.8k
views
WGCNA coupled with differential expression analysis: question about baseline module detection
wgcna
WGCNA
written 4.6 years ago by
Colari19
▴ 60
0
votes
0
replies
85
views
WGCNA module preservation using only adjacency matrix
WGCNA
7 days ago
yang1641
• 0
0
votes
0
replies
41
views
ChemmineOB avaiable for macOS Binary (arm64)?
ChemmineOB
7 days ago
Simone
• 0
0
votes
4
replies
377
views
Limma- Print-tip loess normalisation-printer layout information does not match M row dimension
Normalization
limma
within-arraynormalisation
Printerlayout
7 days ago
dseauer
• 0
0
votes
2
replies
248
views
installation error for BiocNeighbors package
BiocNeighbors
7 days ago
育
• 0
0
votes
2
replies
268
views
Is it possible to parallelise saveHDF5SummarizedExperiment
HDF5Array
9 days ago • updated 7 days ago
Stefano Mangiola
▴ 20
0
votes
1
reply
131
views
DESeq2 "Not full rank" and "less than full rank" error
DESeq2
deseq
updated 8 days ago by
Guido Hooiveld
★ 4.1k • written 8 days ago by
Najla Abassi
• 0
2
votes
2
replies
514
views
Handling biological replicates in DESeq2
DESeq2
updated 8 days ago by
ATpoint
★ 4.5k • written 9 days ago by
sk
• 0
0
votes
0
replies
80
views
Errors trying to load EPIC v2 data in ChAMP
ChAMP
ChAMPdata
9 days ago
elgomez
• 0
0
votes
1
reply
186
views
forgeBSgenomeDataPkgFromNCBI: Error in find_NCBI_assembly_ftp_dir unable to find FTP dir
BSgenomeForge
non-modelorganism
unabletofindFTPdir
updated 9 days ago by
Hervé Pagès
16k • written 9 days ago by
Geetha
• 0
0
votes
3
replies
388
views
ChIPpeakAnno can not load data
genomes
ChIPpeakAnno
written 9 weeks ago by
文杰
• 0
10
votes
7
replies
1.7k
views
Why in Bioconductor community people rarely upvote questions?
bioconductor
updated 9 days ago by
shepherl
4.1k • written 21 months ago by
L
▴ 50
5
votes
2
replies
25k
views
DESeq2: thousands of NA for pvalues?
deseq2
rna-seq
DEGs
cooks cutoff
written 5.9 years ago by
aishu.jp
▴ 30
0
votes
1
reply
161
views
makeContrastsDream for Interaction
limma
DifferentialExpression
variancePartition
dream
12 days ago • updated 6 days ago
abadgerw
• 0
0
votes
1
reply
269
views
Merge Replicates vs Mixed Model
limma
DifferentialExpression
variancePartition
dream
12 days ago • updated 6 days ago
abadgerw
• 0
1
vote
6
replies
857
views
Volcano plot has many values around zero
RNA-seq
DESeq2
volcanoplot
updated 12 days ago by
Michael Love
42k • written 12 days ago by
nramakr
▴ 10
2
votes
4
replies
1.5k
views
Differential Expression Analysis with unbalanced batches without replication between conditions
edgeR
BatchEffect
updated 9 days ago by
Gordon Smyth
51k • written 13 days ago by
Thili
• 0
1
vote
8
replies
961
views
Combining RNAseq and microarray data using edgeR/limma-voom
limma
voom
RNASeq
edgeR
Microarray
written 16 days ago by
Adam Marstrand
• 0
0
votes
2
replies
316
views
DESeq2 interaction between cancer cells and microenvironment cells
DESeq2
written 14 days ago by
ballackselma
• 0
2
votes
7
replies
979
views
Annotation for EPICv2
EpicV2
ChAMPdata
updated 15 days ago by
icecreamlover
• 0 • written 6 weeks ago by
nurkenber
• 0
0
votes
0
replies
110
views
ChIP peaks comparison
ChIPSeqData
genomes
ChIPSeq
15 days ago
user_bioinfo
• 0
0
votes
2
replies
669
views
GOstats kegg analysis in wheat - help - none of the objects in the first column are legitimate kegg ids (but they are)
AnnotationDbi
GOstats
16 days ago • updated 13 days ago
GV Yoshikawa
• 0
1
vote
2
replies
868
views
Consistent Decimals In Data After Antibody Array Background Correction Using Limma:nec Function
limma
MicroarrayData
Normalization
16 days ago • updated 15 days ago
Ai
• 0
4
votes
5
replies
560
views
DESeq Input from Salmon + tximport/tximeta
tximportData
summarizeToGene
tximport
DESeq2
salmon
16 days ago • updated 15 days ago
LuciaNhu
• 0
0
votes
0
replies
107
views
Diffbind: Cut&Run: E-coli spike-in
Normalization
DiffBind
16 days ago
kim
• 0
46,188 results • Page
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Answer: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://diendannhansu.com/threads/hayal-sohbet-odalari.667004/ https://forum.realdigital.org/u/serkan https://animefagos.com/miembros/ser…
Comment: Unlocking Potential: NURS FPX Strategies and Insights
by
efsane_kral2000
• 0
https://www.hayalsohbet.net https://www.yerlichat.com https://www.yerlichat.net https://www.mavisim.net https://www.hayalchat.com http…
Comment: Is it recommended to analyze different tissues together when using edgeR
by
Gordon Smyth
51k
Just plot the samples with plotMDS(). Alternatively you would use `voomLmFit()` with `sample.weights=TRUE` or `var.group=tissue`. In princ…
Comment: Handling Epic Array Data
by
Melisa Tecik
• 0
Thanks a lot for the help. You saved my day
Answer: Differene between the Wald and LRT test for time-series gene expression data
by
James W. MacDonald
67k
The advantage to using the LRT is that it's an omnibus test that tells you if there are changes at any time point. If you have lots of time…
Votes
Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
Answer: Allele frequencies for ALL alleles of one SNP ?
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Is it recommended to analyze different tissues together when using edgeR
Answer: Using Affymetrix Custom Array
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Fred Hutch (Recruiting)
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51k
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67k
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