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Job:
Postdoctoral Position in Bioinformatics - Mainz, Germany
JobPosting
3 hours ago
4r-rtg
• 0
0
votes
1
reply
54
views
More regions in union when increasing DBA$config$mergeOverlap
DiffBind
updated 13 hours ago by
Rory Stark
★ 5.2k • written 1 day ago by
Ian D.
▴ 70
0
votes
1
reply
36
views
Deseq2 and Normalization of RNA sequencing data
DESeq2
updated 3 hours ago by
ATpoint
★ 4.1k • written 14 hours ago by
kcarey
• 0
0
votes
3
replies
68
views
Differences in differential analysis methods for RNA-Seq
DESeq2
StatisticalMethod
Proteomics
DifferentialExpression
RNASeq
updated 2 hours ago by
ATpoint
★ 4.1k • written 14 hours ago by
james.zhang20
• 0
0
votes
1
reply
90
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Getting Error in hclust(d, method = method): NA/NaN/Inf in foreign function call when trying to subset pheatmap
DESeq2
updated 16 hours ago by
ATpoint
★ 4.1k • written 16 hours ago by
angelathuynh5
• 0
2
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0
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31
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News:
Bioconductor 3.19 is Released!
Release
Bioconductor
Packages
Software
17 hours ago
shepherl
3.8k
0
votes
0
replies
49
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Empty table plot using plotGseaTable()
fgsea
18 hours ago • updated 16 hours ago
Chris
• 0
0
votes
3
replies
99
views
Store output of matchPWM()
biostrings
Biostrings
updated 18 hours ago by
James W. MacDonald
65k • written 21 hours ago by
mat149
▴ 70
0
votes
3
replies
203
views
log2FoldChange value is way too different when compared with counts(dds)
DESeq2
updated 16 hours ago by
Michael Love
41k • written 1 day ago by
HAK
• 0
0
votes
2
replies
168
views
Get genomic coordinates of CpGs sites (chromosomes, genomic position)
GenomeWideAssociation
SequenceAnnotation
MethylationArray
GenomicDistributionsData
1 day ago • updated 12 hours ago
Yveto
• 0
0
votes
2
replies
144
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limma-voom: Calculate the log-fold change in gene expression within a sample
limma
RNASeq
voom
written 9 days ago by
taur.vil
• 0
14
votes
17
replies
1.1k
views
Why p value inconsistent when using different number of pathway score?
limma
11 days ago • updated 18 hours ago
Chris
• 0
1
vote
4
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447
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DEseq2 coefficient
DESeq2
coefficient
9 weeks ago • updated 18 hours ago
JKim
• 0
13 results • Page
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Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
> I am just re-processing due to being uncertain about how they used the edgeR analysis to reach gene level edgeR devs published something…
Comment: Differences in differential analysis methods for RNA-Seq
by
james.zhang20
• 0
Thanks for the explanations, it has helped clarify some things. Unfortunately, I am working from an early access public dataset (https://do…
Answer: Deseq2 and Normalization of RNA sequencing data
by
ATpoint
★ 4.1k
There is no expectation of normality that is realistic in terms of expression level. Levels are widely different between genes, and counts …
Comment: Differences in differential analysis methods for RNA-Seq
by
ATpoint
★ 4.1k
MAGeCK is a command line tool that is easy to use. I recommend you use it because a) the logFCs from DESeq2 and MAGeCK will be very similar…
Comment: Get genomic coordinates of CpGs sites (chromosomes, genomic position)
by
Yveto
• 0
Thank for your response. It is Illumina 450 K. I use this code ```{r } library(IlluminaHumanMethylation450kanno.ilmn12.hg19) annotat…
Votes
A: Error in DESeqDataSet : some values in assay are not integers
Bioconductor 3.19 is Released!
Bioconductor 3.19 is Released!
Answer: DEseq2 coefficient
SPIA plotP giving error
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