Profile Posts Awards
Show
all questions tools blogs news tutorials forum answers comments
0
votes
0
replies
870
views
Differential expression with single cell data: any good two component (hurdle) models recently?
SingleCellWorkflow DifferentialExpression SingleCell SingleCellMultiModal MAST
2.5 years ago Nik Tuzov ▴ 90
0
votes
1
reply
1.5k
views
Comment: Comment: stat value is throwed out after lfcShrink in DESeq2
3.9 years ago Nik Tuzov ▴ 90
0
votes
0
replies
1.2k
views
Comment: Comment: DeSEQ2 factor effect without interaction effect
3.9 years ago Nik Tuzov ▴ 90
0
votes
1
reply
586
views
Comment: C: The basis for the full rank design matrix requirement in DESeq2
4.8 years ago Nik Tuzov ▴ 90
2
votes
3
replies
586
views
The basis for the full rank design matrix requirement in DESeq2
deseq2
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 90
0
votes
1
reply
1.0k
views
Comment: C: Error when providing contrast coefficients to lfcShrink() of DESeq2 package
5.1 years ago Nik Tuzov ▴ 90
3
votes
4
replies
1.0k
views
Error when providing contrast coefficients to lfcShrink() of DESeq2 package
deseq2
updated 5.1 years ago by 43k • written 5.1 years ago by ▴ 90
0
votes
1
reply
1.6k
views
Comment: C: FCSTransTransform() implementation in flowCore
5.5 years ago Nik Tuzov ▴ 90
4
votes
4
replies
1.6k
views
FCSTransTransform() implementation in flowCore
flowCore FCSTrans flow cytometry
updated 5.5 years ago by ▴ 310 • written 5.5 years ago by ▴ 90
0
votes
0
replies
2.0k
views
Comment: C: Estimation of non-trivial contrasts in MAST
5.6 years ago Nik Tuzov ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Estimation of non-trivial contrasts in MAST
5.8 years ago Nik Tuzov ▴ 90
0
votes
0
replies
2.0k
views
Comment: C: Estimation of non-trivial contrasts in MAST
5.8 years ago Nik Tuzov ▴ 90
0
votes
1
reply
1.5k
views
Comment: C: Logistic regression in MAST - question
5.8 years ago Nik Tuzov ▴ 90
2
votes
3
replies
1.5k
views
Logistic regression in MAST - question
mast
updated 5.8 years ago by ▴ 270 • written 5.8 years ago by ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Estimation of non-trivial contrasts in MAST
5.8 years ago Nik Tuzov ▴ 90
2
votes
7
replies
2.0k
views
Estimation of non-trivial contrasts in MAST
mast
updated 5.8 years ago by ▴ 270 • written 5.8 years ago by ▴ 90
0
votes
1
reply
5.0k
views
Comment: C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
7.2 years ago Nik Tuzov ▴ 90
0
votes
0
replies
5.0k
views
Comment: C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
7.2 years ago Nik Tuzov ▴ 90
0
votes
0
replies
5.0k
views
Comment: C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
7.2 years ago Nik Tuzov ▴ 90
10
votes
14
replies
5.0k
views
Why limma, edgeR, and DESeq did not implement fold change moderation first?
limma edger deseq deseq2
updated 7.2 years ago by 52k • written 7.2 years ago by ▴ 90
0
votes
1
reply
5.0k
views
Comment: C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
7.2 years ago Nik Tuzov ▴ 90
0
votes
0
replies
5.0k
views
Comment: C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
7.2 years ago Nik Tuzov ▴ 90
0
votes
1
reply
5.0k
views
Comment: C: Why limma, edgeR, and DESeq did not implement fold change moderation first?
7.2 years ago Nik Tuzov ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Seeking confirmation on manually setting contrasts for a 3-factor design in DESe
7.3 years ago Nik Tuzov ▴ 90
0
votes
0
replies
6.7k
views
Comment: C: modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
7.3 years ago Nik Tuzov ▴ 90
0
votes
1
reply
6.7k
views
Comment: C: modeling zero-dominated RNA-seq with voom/limma and hurdle models (pscl)
7.3 years ago Nik Tuzov ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Seeking confirmation on manually setting contrasts for a 3-factor design in DESe
7.3 years ago Nik Tuzov ▴ 90
0
votes
1
reply
2.0k
views
Comment: C: Interactions in DESeq2
7.3 years ago Nik Tuzov ▴ 90
0
votes
1
reply
2.9k
views
Comment: C: Zero inflation in RUV normalization and DE for single cell data
7.4 years ago Nik Tuzov ▴ 90
0
votes
1
reply
2.9k
views
Comment: C: Zero inflation in RUV normalization and DE for single cell data
7.4 years ago Nik Tuzov ▴ 90
0
votes
2
replies
2.9k
views
Comment: C: Zero inflation in RUV normalization and DE for single cell data
7.4 years ago Nik Tuzov ▴ 90
2
votes
9
replies
2.9k
views
Zero inflation in RUV normalization and DE for single cell data
ruv ruvseq ruvnormalize single-cell zero-inflated
updated 7.4 years ago by ▴ 980 • written 7.4 years ago by ▴ 90
0
votes
0
replies
2.7k
views
Comment: C: Does it make sense to consider RUVr normalization for single cell RNA analysis?
7.4 years ago Nik Tuzov ▴ 90
0
votes
1
reply
2.7k
views
Comment: C: Does it make sense to consider RUVr normalization for single cell RNA analysis?
7.4 years ago Nik Tuzov ▴ 90
1
vote
3
replies
2.7k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV ruvseq ruvr ruvnormalize single cell
7.4 years ago Nik Tuzov ▴ 90
0
votes
0
replies
7.0k
views
Comment: C: Limma-voom vs limma-trend
8.0 years ago Nik Tuzov ▴ 90
0
votes
1
reply
7.0k
views
Comment: C: Limma-voom vs limma-trend
8.0 years ago Nik Tuzov ▴ 90
0
votes
1
reply
7.0k
views
Comment: C: Limma-voom vs limma-trend
8.0 years ago Nik Tuzov ▴ 90
0
votes
0
replies
7.0k
views
Comment: C: Limma-voom vs limma-trend
8.0 years ago Nik Tuzov ▴ 90
3
votes
9
replies
7.0k
views
Limma-voom vs limma-trend
limma limma voom limma-trend
updated 8.0 years ago by 52k • written 8.0 years ago by ▴ 90
0
votes
0
replies
2.1k
views
Comment: C: Overriding of shrinkage in DESeq2
8.6 years ago Nik Tuzov ▴ 90
0
votes
2
replies
2.1k
views
Comment: C: Overriding of shrinkage in DESeq2
8.6 years ago Nik Tuzov ▴ 90
0
votes
1
reply
2.1k
views
Comment: C: Overriding of shrinkage in DESeq2
8.7 years ago Nik Tuzov ▴ 90
10
votes
9
replies
2.1k
views
Overriding of shrinkage in DESeq2
deseq2
updated 8.7 years ago by 43k • written 8.7 years ago by ▴ 90
0
votes
1
reply
4.1k
views
Comment: C: Low-count filtering with uneven sequencing depth between samples?
9.1 years ago Nik Tuzov ▴ 90
0
votes
2
replies
4.1k
views
Comment: C: Low-count filtering with uneven sequencing depth between samples?
9.1 years ago Nik Tuzov ▴ 90
0
votes
1
reply
4.1k
views
Comment: C: Low-count filtering with uneven sequencing depth between samples?
9.1 years ago Nik Tuzov ▴ 90
0
votes
0
replies
3.1k
views
Comment: C: (how) can I make heatmaps/PCA in DESeq2 using normalized counts from cummeRbund?
9.1 years ago Nik Tuzov ▴ 90
0
votes
1
reply
8.4k
views
Comment: C: Normalization methodology in DESeq/DESeq2 vs edgeR
9.1 years ago Nik Tuzov ▴ 90
0
votes
1
reply
3.1k
views
Comment: C: (how) can I make heatmaps/PCA in DESeq2 using normalized counts from cummeRbund?
9.1 years ago Nik Tuzov ▴ 90
64 results • Page 1 of 2
Content Search
Users
Tags
Badges
Help About
FAQ
Access RSS
API
Stats

Use of this site constitutes acceptance of our User Agreement and Privacy Policy.

Powered by the version 2.3.6