Log In
Sign Up
about
faq
Ask a question
Latest
News
Jobs
Tutorials
Tags
Users
New Post
Latest
News
Jobs
Tutorials
Tags
Users
Log In
Sign Up
About
Limit
all time
today
this week
this month
this year
Unanswered
All posts
Sort
Update
Answers
Bookmarks
Creation
Replies
Rank
Views
Votes
Showing :
ruv
•
reset
1
vote
2
replies
1.4k
views
RUV4 for microarrays
RUV4
RUV
Microarray
3.1 years ago
Antonio
• 0
5
votes
6
replies
1.7k
views
RUVseq to remove a library size artefact in a zebrafish brain RNA-seq dataset
RUVSeq
RUV
RNA-seq
updated 3.7 years ago by
James W. MacDonald
66k • written 3.7 years ago by
karissa.barthelson
▴ 20
0
votes
1
reply
1.7k
views
Application of RUV to a small Nanostring dataset
RUV
Nanostring
RUV-III
updated 4.1 years ago by
hermidalc
▴ 20 • written 4.9 years ago by
raf4
▴ 20
0
votes
3
replies
992
views
Highly variable gene analysis including RUVs batch correction
deseq2
RUV
batch
highly variable genes
updated 4.3 years ago by
tmms
• 0 • written 4.3 years ago by
f_pardow
• 0
0
votes
1
reply
1.2k
views
Using RUVs on Deseq2 but clustering still seems wrong
deseq2
ruv
batch
updated 4.7 years ago by
Michael Love
42k • written 4.7 years ago by
r.tom
• 0
0
votes
0
replies
937
views
missMethyl EPIC manifest update
missmethyl
epic
illuminahumanmethylationepicanno.ilm10b4.hg19.
ruv
5.8 years ago
peter.fransquet
• 0
0
votes
0
replies
917
views
which value from ruvadj in missMethyl can present methylation status
methylation
missmethyl
RUV
batch effect
6.1 years ago
RC
• 0
0
votes
0
replies
936
views
MissMethyl: Sample size and control probes
missmethyl
RUV
control probes
6.1 years ago
Taub, Margaret
▴ 10
2
votes
9
replies
2.6k
views
Zero inflation in RUV normalization and DE for single cell data
ruv
ruvseq
ruvnormalize
single-cell
zero-inflated
updated 6.8 years ago by
davide risso
▴ 950 • written 6.9 years ago by
Nik Tuzov
▴ 80
1
vote
3
replies
2.3k
views
Does it make sense to consider RUVr normalization for single cell RNA analysis?
RUV
ruvseq
ruvr
ruvnormalize
single cell
6.9 years ago
Nik Tuzov
▴ 80
0
votes
0
replies
932
views
Differential expressed genes between different samples in RUVseq
rnaseq
ruv
differential gene expression
R
7.0 years ago
manish20072013
• 0
3
votes
4
replies
3.2k
views
Single cells batch effects
RUV
single cell
batch effect
7.2 years ago
ribioinfo
▴ 100
0
votes
0
replies
1.0k
views
Has anyone used the RUV package for Microbiome data?
ruv
7.3 years ago
sasha
• 0
0
votes
1
reply
2.3k
views
Can FPKM or TPM values be used as RUVs input ?
ruvseq
ruvg
ruv
updated 7.4 years ago by
davide risso
▴ 950 • written 7.5 years ago by
weiwsmiling
• 0
0
votes
0
replies
1.1k
views
Bach effect and PEER/RUV correction on large population
methylation
gene expression
sva
batch effect
ruv
7.5 years ago
carleshf
▴ 10
2
votes
1
reply
1.6k
views
RUVSeq empirical negative controls? how many to take to find the span set
ruvseq
RUV
ruvnormalize
ruvg
7.9 years ago
anthonycolombo60
• 0
0
votes
5
replies
2.3k
views
RUVseq for microRNAs
ruvseq
ruv
microrna
8.9 years ago • updated 8.8 years ago
sergio.espeso-gil
• 0
0
votes
1
reply
1.6k
views
normalised data after RUV2( )
ruv
microarray
updated 8.9 years ago by
gthm
▴ 30 • written 9.1 years ago by
Pauly Lin
▴ 150
3
votes
2
replies
2.7k
views
Normalisation before RUVg and RUV2?
ruvseq
ruv
updated 9.1 years ago by
davide risso
▴ 950 • written 9.1 years ago by
Pauly Lin
▴ 150
1
vote
9
replies
2.7k
views
RUV: removing unwanted variation in RNA-seq
RUV
ruvseq
rnaseq
9.1 years ago
sergio.espeso-gil
• 0
20 results • Page
1 of 1
Recent ...
Replies
Comment: error loading collectTRI regulon
by
silvaesilva.da
• 0
Fantastic. Thank you very much. Everything has been sorted out
Answer: DESeq2 returns results for group with just one replicate
by
James W. MacDonald
66k
There is no problem having only one replicate per group, so long as you have replicates for other groups. The degrees of freedom are based …
Answer: Limma model.matrix design with batch effect and different life stages proportion
by
Masongeorge
• 0
Thanks for this post. i found it helpful for my own issue that was occurring on the backend of this page.
Comment: error loading collectTRI regulon
by
deeenes
▴ 50
I fixed the original, Ensembl HTTP 403 error only now, [see here][1]. If you've seen it gone earlier today, only shows that this error appe…
Answer: GESA with certain gene list returns no result with human genom, but many result
by
James W. MacDonald
66k
Ideally you would use something better than gene symbols for this. I realize that biologists like gene symbols, but they are really terribl…
Votes
Answer: DESeq2 returns results for group with just one replicate
Answer: DESeq2 returns results for group with just one replicate
Comment: error loading collectTRI regulon
A: Scaling option in fastMNN
Answer: Behaviour of featureCounts when quantifying multi-mapping reads
Awards
• All
Scholar
to
James W. MacDonald
66k
Popular Question
to
Le
• 0
Popular Question
to
Jon Bråte
▴ 250
Popular Question
to
alan.ocallaghan
▴ 160
Popular Question
to
yesitsjess
• 0
Locations
• All
Ukraine,
8 minutes ago
United States,
9 minutes ago
United States,
35 minutes ago
United States,
45 minutes ago
Germany,
46 minutes ago
Traffic: 520 users visited in the last hour
Content
Search
Users
Tags
Badges
Help
About
FAQ
Access
RSS
API
Stats
Use of this site constitutes acceptance of our
User Agreement and Privacy Policy
.
Powered by the
version 2.3.6