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DESeq2 TimeCourse with alpha and ihw and genes that change up to a certain timepoint
TimeCourse DESeq2 Manual
updated 3.1 years ago by 43k • written 3.1 years ago by ▴ 110
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1.3k
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Comment: C: model design in rna seq - deseq2
6.1 years ago mat.lesche ▴ 110
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1.6k
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Comment: C: Splitting a dataset and control sample batch
6.6 years ago mat.lesche ▴ 110
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1.6k
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Splitting a dataset and control sample batch
deseq2 interactions batch effect correction grouping variable
updated 6.6 years ago by 43k • written 6.6 years ago by ▴ 110
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1.6k
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Comment: C: Splitting a dataset and control sample batch
6.6 years ago mat.lesche ▴ 110
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2.4k
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Comment: C: lfcShrink behavior with homogeneous expression dataset
6.7 years ago mat.lesche ▴ 110
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4
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2.4k
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lfcShrink behavior with homogeneous expression dataset
deseq2 lfcshrink betaprior
updated 6.7 years ago by 43k • written 6.7 years ago by ▴ 110
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6.8k
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Comment: C: lfcShrink and factors with multiple levels
7.4 years ago mat.lesche ▴ 110
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6.8k
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Comment: C: lfcShrink and factors with multiple levels
7.4 years ago mat.lesche ▴ 110
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6.8k
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Comment: C: lfcShrink and factors with multiple levels
7.4 years ago mat.lesche ▴ 110
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6.8k
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Comment: C: lfcShrink and factors with multiple levels
7.4 years ago mat.lesche ▴ 110
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6.8k
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Comment: C: lfcShrink and factors with multiple levels
7.4 years ago mat.lesche ▴ 110
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1
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6.8k
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Comment: C: lfcShrink and factors with multiple levels
7.4 years ago mat.lesche ▴ 110
5
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19
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6.8k
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lfcShrink and factors with multiple levels
deseq2 lfcshrink relevel
updated 7.4 years ago by 43k • written 7.4 years ago by ▴ 110
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6.8k
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Comment: C: lfcShrink and factors with multiple levels
7.4 years ago mat.lesche ▴ 110
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1
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6.8k
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Comment: C: lfcShrink and factors with multiple levels
7.4 years ago mat.lesche ▴ 110
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3.8k
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Comment: C: using paired end and single end data in featurecounts
7.7 years ago mat.lesche ▴ 110
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2.3k
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Comment: C: Finding the correct covariate for RNAseq experiment
7.7 years ago mat.lesche ▴ 110
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9.2k
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Comment: C: RNA STAR to DESeq2
7.7 years ago mat.lesche ▴ 110
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4
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2.3k
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Finding the correct covariate for RNAseq experiment
deseq2 removebatcheffect() sva differential gene expression
updated 7.7 years ago by 43k • written 7.7 years ago by ▴ 110
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2.3k
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Comment: C: Finding the correct covariate for RNAseq experiment
7.7 years ago mat.lesche ▴ 110
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1.5k
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Comment: C: Increased number of total exons in DEXSeq
8.2 years ago mat.lesche ▴ 110
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2.0k
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Answer: A: dexseq doesn't identify exons as differential
8.2 years ago mat.lesche ▴ 110
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1.8k
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counting with htseq script in DEXSeq
DEXSeq dexseq_count htseq
8.2 years ago mat.lesche ▴ 110
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1
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2.8k
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Comment: C: Grouping a multifactor design in DESeq2 and accouting for sex
8.6 years ago mat.lesche ▴ 110
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1
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2.8k
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Comment: C: Grouping a multifactor design in DESeq2 and accouting for sex
8.6 years ago mat.lesche ▴ 110
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2.8k
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Comment: C: Grouping a multifactor design in DESeq2 and accouting for sex
8.6 years ago mat.lesche ▴ 110
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1
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2.8k
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Comment: C: Grouping a multifactor design in DESeq2 and accouting for sex
8.6 years ago mat.lesche ▴ 110
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2.8k
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Comment: C: Grouping a multifactor design in DESeq2 and accouting for sex
8.6 years ago mat.lesche ▴ 110
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12
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2.8k
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Grouping a multifactor design in DESeq2 and accouting for sex
deseq2 multiple factor design group
updated 8.6 years ago by 43k • written 8.6 years ago by ▴ 110
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4.2k
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Comment: C: junction.bed to GTF to use in DEXSeq
9.4 years ago mat.lesche ▴ 110
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4.2k
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Comment: C: junction.bed to GTF to use in DEXSeq
9.6 years ago mat.lesche ▴ 110
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2
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4.2k
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Comment: C: junction.bed to GTF to use in DEXSeq
9.7 years ago mat.lesche ▴ 110
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1
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4.2k
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Comment: C: junction.bed to GTF to use in DEXSeq
9.7 years ago mat.lesche ▴ 110
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4.2k
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Comment: C: junction.bed to GTF to use in DEXSeq
9.7 years ago mat.lesche ▴ 110
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1
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4.2k
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Comment: C: junction.bed to GTF to use in DEXSeq
9.7 years ago mat.lesche ▴ 110
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4.2k
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Comment: C: junction.bed to GTF to use in DEXSeq
9.7 years ago mat.lesche ▴ 110
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2.6k
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Answer: A: DEXSeq on introns but exon overlap and error message
9.8 years ago mat.lesche ▴ 110
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3
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2.6k
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DEXSeq on introns but exon overlap and error message
dexseq intron retention prepare annotation
9.8 years ago mat.lesche ▴ 110
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2.6k
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Comment: C: DEXSeq on introns but exon overlap and error message
9.8 years ago mat.lesche ▴ 110
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2.8k
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Comment: C: Design and independent filtering of patient RNA-seq data
9.8 years ago mat.lesche ▴ 110
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1
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2.8k
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Comment: C: Design and independent filtering of patient RNA-seq data
9.8 years ago mat.lesche ▴ 110
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1
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2.8k
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Comment: C: Design and independent filtering of patient RNA-seq data
9.8 years ago mat.lesche ▴ 110
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1
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2.8k
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Comment: C: Design and independent filtering of patient RNA-seq data
9.8 years ago mat.lesche ▴ 110
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7.7k
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Comment: C: Rsubread::featureCounts extremely slow on some annotations
9.8 years ago mat.lesche ▴ 110
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2.8k
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Comment: C: Design and independent filtering of patient RNA-seq data
9.8 years ago mat.lesche ▴ 110
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2.8k
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Comment: C: Design and independent filtering of patient RNA-seq data
9.8 years ago mat.lesche ▴ 110
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13
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2.8k
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Design and independent filtering of patient RNA-seq data
differential gene expression deseq2 design independent filtering limma
updated 9.9 years ago by 68k • written 9.9 years ago by ▴ 110
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10k
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Comment: C: DESeq2: multiple factors and comparison of a main factor between samples
10.1 years ago mat.lesche ▴ 110
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3
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10k
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DESeq2: multiple factors and comparison of a main factor between samples
deseq2 multiple factor design
updated 10.1 years ago by 43k • written 10.1 years ago by ▴ 110
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