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deseq2 lfcshrink relevel

updated 7.0 years ago by Michael Love 42k • written 7.0 years ago by mat.lesche ▴ 110

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junctionseq relevel reference

7.7 years ago Assa Yeroslaviz ★ 1.5k

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junctionseq qorts multiple factor design relevel

7.7 years ago Assa Yeroslaviz ★ 1.5k

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deseq2 relevel resultsNames multifactorial design

updated 8.7 years ago by Michael Love 42k • written 8.7 years ago by rclaire ▴ 20

4 results • Page 1 of 1

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Comment: SingleR Label.Ont by Leslie • 0

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Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

An LRT has nothing to do with any contrast, but instead is comparing the model fit with and without certain coefficients. So if you do ``…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi, Unfortunately, I don't know anyone who could help me with this particular question. Would calling the results() function with a cont…

Comment: limma technical repeat correction by john • 0

Hi @gordonsmyth, Thank you very much for the clarification, including the details about lmer() and for confirming that the original analysi…

Comment: Error: 'term_similarity_from_KEGG' not found in simplifyEnrichment package by James W. MacDonald 67k

And this is [documented in the NEWS file][1]. [1]: https://bioconductor.org/packages/release/bioc/news/simplifyEnrichment/NEWS