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588
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is Dada2 biased toward a particular sequence ?
virology
dada2
amplican
Sequencing
RNASeq
16 months ago
Sara
• 0
0
votes
0
replies
678
views
Using DADA2 for finding viral sequence variants
VariantDetection
dada2
RNASeq
16 months ago
Sara
• 0
1
vote
1
reply
684
views
Best way to handle batch effects from difference Mice?
RNASeqData
BatchEffect
edgeR
limma
updated 20 months ago by
Gordon Smyth
52k • written 20 months ago by
Sara
• 0
0
votes
1
reply
1.3k
views
Comment:
Comment: Is it okay to increase filtering to get more significant Adjusted P Values for D
22 months ago
Sara
• 0
1
vote
3
replies
1.3k
views
Is it okay to increase filtering to get more significant Adjusted P Values for DEGs found using Limma?
RNASeqPower
edgeR
DifferentialExpression
limma
RNASeq
updated 22 months ago by
Gordon Smyth
52k • written 22 months ago by
Sara
• 0
0
votes
0
replies
759
views
Analyze Amplicon Seq results for variants and mutation sites
virus
pcr
amplican
mutations
2.1 years ago
Sara
• 0
0
votes
1
reply
5.4k
views
Comment:
Comment: Why is it better to count genes at the exon-level using subread::featureCounts()
2.2 years ago
Sara
• 0
3
votes
3
replies
5.4k
views
Why is it better to count genes at the exon-level using subread::featureCounts()?
RNASeq
Rsubread
featureCounts
Quantification
updated 2.2 years ago by
Gordon Smyth
52k • written 2.2 years ago by
Sara
• 0
1
vote
1
reply
3.1k
views
Quantification of Genes with RSubread::featureCounts() at exon-level vs gene-level?
Subread
RNASeq
featureCounts
quantification
updated 2.3 years ago by
Gordon Smyth
52k • written 2.3 years ago by
Sara
• 0
0
votes
0
replies
2.9k
views
Comment:
Comment: Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
2.3 years ago
Sara
• 0
3
votes
6
replies
2.9k
views
Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
Log2
edgeR
RNA
limma
Normalization
2.3 years ago
Sara
• 0
0
votes
1
reply
2.9k
views
Comment:
Comment: Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
2.3 years ago
Sara
• 0
0
votes
0
replies
2.9k
views
Comment:
Comment: Limma: log2 of TMM values for RNA-Seq Analysis and PlotMDS()?
2.3 years ago
Sara
• 0
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