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Comment: Comment: how limma work with continous variables
5 months ago adR ▴ 40
2
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4
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718
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how limma work with continous variables
GordonSmyth limmaGUI lmFit voom
updated 5 months ago by 52k • written 5 months ago by ▴ 40
1
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1
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896
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how to call an app from Cytoscape using R?
RCy3
updated 23 months ago by ▴ 30 • written 23 months ago by ▴ 40
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0
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8.2k
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Answer: Answer: DESeq2 - Error: full model matrix is less than full rank
2.3 years ago adR ▴ 40
3
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5
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4.2k
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how to color specific node or gene symbol from cnetplot ?
clusterProfiler enrichplot cnetplot GuangchuangYu
updated 2.3 years ago by ★ 1.2k • written 2.6 years ago by ▴ 40
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4.2k
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Comment: Comment: how to color specific node or gene symbol from cnetplot ?
2.6 years ago adR ▴ 40
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1
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1.2k
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Comment: Comment: how to change axis labeling in limma density plot
2.8 years ago adR ▴ 40
1
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3
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1.2k
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how to change axis labeling in limma density plot
desnity limma
updated 2.8 years ago by 52k • written 2.8 years ago by ▴ 40
0
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0
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1.5k
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Comment: Comment: normalizing EXOM-seq read using DESeq2
3.1 years ago adR ▴ 40
0
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1
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1.5k
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Comment: Comment: normalizing EXOM-seq read using DESeq2
3.1 years ago adR ▴ 40
0
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4
replies
1.5k
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normalizing EXOM-seq read using DESeq2
ExomeSeq DESeq2
3.1 years ago adR ▴ 40
0
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1
reply
860
views
quantifying exom reads featureCount
ExomeSeq featureCount
3.1 years ago adR ▴ 40
0
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0
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860
views
Answer: Answer: quantifying exom reads featureCount
3.1 years ago adR ▴ 40
0
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1
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11k
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Comment: Comment: DESeq2 One-way ANOVA with 3 sample groups?
3.1 years ago adR ▴ 40
0
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2
replies
984
views
R/Bioconductor package for Circulating Cell-Free DNA data analysis
SequencingData
3.2 years ago • updated 3.1 years ago adR ▴ 40
0
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0
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984
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Comment: Comment: R/Bioconductor package for Circulating Cell-Free DNA data analysis
3.1 years ago adR ▴ 40
0
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1
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1.4k
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Comment: Comment: package for ATACseq data analysis
3.2 years ago adR ▴ 40
0
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3
replies
1.4k
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package for ATACseq data analysis
SequencingData ATACSeq ATACseqQC
updated 2.4 years ago by ★ 5.2k • written 3.2 years ago by ▴ 40
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1
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2.0k
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Unable to install SSPA packages
SSPA
updated 3.5 years ago by ★ 4.6k • written 3.5 years ago by ▴ 40
1
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0
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12k
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Comment: Comment: .onLoad failed in loadNamespace() for 'org.Hs.eg.db'
3.7 years ago adR ▴ 40
0
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0
replies
844
views
How to show rownames in densityheatmaps
ComplexHeatmap
4.1 years ago adR ▴ 40
0
votes
1
reply
652
views
studying periodicity among small number of gene transcripts
DiscoRhythm
updated 3.7 years ago by • 0 • written 4.1 years ago by ▴ 40
1
vote
1
reply
730
views
Any possiblity applying
WGCNA
updated 4.2 years ago by ★ 4.0k • written 4.2 years ago by ▴ 40
1
vote
1
reply
609
views
correlation analysis
Hmisc
updated 4.2 years ago by 43k • written 4.2 years ago by ▴ 40
0
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0
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1.5k
views
Comment: C: Warning messages: gseaKEGG
4.4 years ago adR ▴ 40
0
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2
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1.5k
views
Warning messages: gseaKEGG
clusterProfiler r Tutorial
updated 4.4 years ago by ★ 4.0k • written 4.4 years ago by ▴ 40
4
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1
reply
7.8k
views
Warning message as converting gene Symbol to ENTREZID
go clusterprofiler
updated 4.5 years ago by 67k • written 4.5 years ago by ▴ 40
0
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0
replies
4.2k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
4.5 years ago adR ▴ 40
0
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1
reply
4.2k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
4.5 years ago adR ▴ 40
0
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1
reply
4.2k
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Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
4.5 years ago adR ▴ 40
0
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1
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4.2k
views
Comment: C: Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
4.5 years ago adR ▴ 40
5
votes
9
replies
4.2k
views
Pipeline to analyzing Microarray data set( GSE files from NCBI GEO)
microarray affy
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by ▴ 40
0
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1
reply
24k
views
Answer: C: Installing EnhancedVolcano package in R
4.5 years ago adR ▴ 40
2
votes
1
reply
569
views
small number of significant gene
deseq2
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 40
2
votes
1
reply
1.6k
views
DESeq Data Set From Matrix
deseq2
updated 4.7 years ago by 43k • written 4.7 years ago by ▴ 40
0
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0
replies
11k
views
Comment: C: DESeq2 vs edgeR results analysis
4.7 years ago adR ▴ 40
3
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5
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11k
views
DESeq2 vs edgeR results analysis
deseq2 edgeR
updated 2.9 years ago by 52k • written 4.7 years ago by ▴ 40
0
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0
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11k
views
Comment: C: DESeq2 vs edgeR results analysis
4.7 years ago adR ▴ 40
2
votes
2
replies
2.7k
views
how to do normalization using edgeR
edger
updated 4.7 years ago by 52k • written 4.7 years ago by ▴ 40
1
vote
1
reply
1.1k
views
Design edger with one or more continues variables
edger
updated 4.7 years ago by 52k • written 4.7 years ago by ▴ 40
0
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1
reply
1.6k
views
mcols(object)$betaConv. Use larger maxit argument with nbinomWaldTest")
deseq2
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 40
0
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1
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1.5k
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Comment: C: DESeq2 result extraction
4.8 years ago adR ▴ 40
2
votes
4
replies
1.5k
views
DESeq2 result extraction
deseq2
updated 4.8 years ago by 43k • written 4.8 years ago by ▴ 40
0
votes
0
replies
426
views
DESeq2 analysis with scaled continues variables
normalization
4.8 years ago adR ▴ 40
0
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1
reply
4.9k
views
Comment: C: Centering and scaling numeric variables
4.8 years ago adR ▴ 40
0
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1
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1.2k
views
Comment: A: Design DESeq2 with one or more continues variables
4.8 years ago adR ▴ 40
1
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3
replies
1.2k
views
Design DESeq2 with one or more continues variables
deseq2
4.8 years ago adR ▴ 40
0
votes
2
replies
4.9k
views
Comment: A: Centering and scaling numeric variables
4.8 years ago adR ▴ 40
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