Bioconductor FeatureCount

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459

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featureCount Rsubread HPC

13 months ago kthapa • 0

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1.5k

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DESeq2 FeatureCount

updated 2.2 years ago by ATpoint ★ 4.5k • written 2.2 years ago by Jiayi • 0

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835

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ExomeSeq featureCount

3.0 years ago adR ▴ 40

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1.9k

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featurecount rsubread GenomicAlignments

4.6 years ago Konstantinos Yeles ▴ 80

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2.9k

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dexseq rsubread featureCount software error

updated 4.9 years ago by Yang Liao ▴ 450 • written 4.9 years ago by seung.ho.steven.choi • 0

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2.1k

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featureCount rna-seq gene_id re_gene_id stringtie

updated 5.8 years ago by Wei Shi ★ 3.6k • written 5.8 years ago by IRAIA.MAIALEN • 0

6 results • Page 1 of 1

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Comment: SingleR Label.Ont by Leslie • 0

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Comment: Question about using LRT test for time course experiments with DESeq2 by James W. MacDonald 67k

An LRT has nothing to do with any contrast, but instead is comparing the model fit with and without certain coefficients. So if you do ``…

Comment: Question about using LRT test for time course experiments with DESeq2 by Denise • 0

Hi, Unfortunately, I don't know anyone who could help me with this particular question. Would calling the results() function with a cont…

Comment: limma technical repeat correction by john • 0

Hi @gordonsmyth, Thank you very much for the clarification, including the details about lmer() and for confirming that the original analysi…

Comment: Error: 'term_similarity_from_KEGG' not found in simplifyEnrichment package by James W. MacDonald 67k

And this is [documented in the NEWS file][1]. [1]: https://bioconductor.org/packages/release/bioc/news/simplifyEnrichment/NEWS