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2.0k
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convert local downloaded bigwig files to .bed files
BRgen BRGenomics
updated 22 months ago by ★ 4.5k • written 22 months ago by ▴ 30
0
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0
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532
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is it possible to limit fgsea to particular tissue type?
fgsea
2.0 years ago kavator ▴ 30
0
votes
3
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2.6k
views
why does stat column disappears after lfcshrink on deseq 2 and why does fgsea uses stat column (not affected by shrinking) for fgsea?
fgsea DESeq2
updated 3.8 years ago by ★ 4.5k • written 3.8 years ago by ▴ 30
0
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1
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1.3k
views
do expression of leading edges within a negative NES term reflect the same direction as it's enrichment score? aka downregulation of leading edges
fgsea
updated 4.4 years ago by ▴ 280 • written 4.4 years ago by ▴ 30
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0
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1.8k
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Comment: C: what does gseaparam argument in fgsea() means?
4.4 years ago kavator ▴ 30
0
votes
1
reply
797
views
PSEA deconvolution; some of the coefficient is NA?
PSEA Deconvolution
4.4 years ago kavator ▴ 30
1
vote
2
replies
1.8k
views
what does gseaparam argument in fgsea() means?
fgsea
updated 4.4 years ago by ▴ 280 • written 4.4 years ago by ▴ 30
1
vote
0
replies
9.9k
views
Comment: C: Error from DegPlot $<-.data.frame`(`*tmp*`, "xs", value = integer(0)) : replacem
4.5 years ago kavator ▴ 30
3
votes
2
replies
9.9k
views
Error from DegPlot $<-.data.frame`(`*tmp*`, "xs", value = integer(0)) : replacement has 0 rows, data has 96
DEGreport DegPlot
updated 4.5 years ago by ★ 4.0k • written 4.5 years ago by ▴ 30
3
votes
10
replies
14k
views
keytype not supported in clusterprofiler when it is ensembl IDs?
clusterProfiler enrichGO
updated 4.6 years ago by 67k • written 4.6 years ago by ▴ 30
0
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0
replies
766
views
Comment: C: Ashr error: Optimization failed to converge. Results may be unreliable. Try incr
4.6 years ago kavator ▴ 30
0
votes
0
replies
14k
views
Comment: C: keytype not supported in clusterprofiler when it is ensembl IDs?
4.6 years ago kavator ▴ 30
0
votes
0
replies
14k
views
Comment: C: keytype not supported in clusterprofiler when it is ensembl IDs?
4.6 years ago kavator ▴ 30
0
votes
1
reply
14k
views
Comment: C: keytype not supported in clusterprofiler when it is ensembl IDs?
4.6 years ago kavator ▴ 30
0
votes
2
replies
766
views
Ashr error: Optimization failed to converge. Results may be unreliable. Try increasing maxiter and rerunning.
ashr
4.6 years ago kavator ▴ 30
0
votes
0
replies
14k
views
Comment: C: keytype not supported in clusterprofiler when it is ensembl IDs?
4.6 years ago kavator ▴ 30
0
votes
2
replies
14k
views
Comment: C: keytype not supported in clusterprofiler when it is ensembl IDs?
updated 4.6 years ago by ★ 4.0k • written 4.6 years ago by ▴ 30
0
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0
replies
3.1k
views
Comment: C: Is org.Mm.eg.db updated to mus musculus version 99?
4.6 years ago kavator ▴ 30
0
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0
replies
3.1k
views
Comment: C: Is org.Mm.eg.db updated to mus musculus version 99?
4.6 years ago kavator ▴ 30
0
votes
1
reply
3.1k
views
Comment: C: Is org.Mm.eg.db updated to mus musculus version 99?
4.6 years ago kavator ▴ 30
0
votes
1
reply
1.1k
views
Comment: C: DEGreport for multifactorial designs
4.6 years ago kavator ▴ 30
1
vote
3
replies
1.1k
views
DEGreport for multifactorial designs
DEGreport
updated 4.6 years ago by ▴ 140 • written 4.6 years ago by ▴ 30
1
vote
5
replies
3.1k
views
Is org.Mm.eg.db updated to mus musculus version 99?
org.Mm.eg.db AnnotationDbi
4.6 years ago kavator ▴ 30
0
votes
0
replies
2.6k
views
Comment: C: unable to load DEGreport on rstudio after installation
4.6 years ago kavator ▴ 30
0
votes
2
replies
2.6k
views
unable to load DEGreport on rstudio after installation
DEGreport
updated 4.6 years ago by 25k • written 4.6 years ago by ▴ 30
1
vote
1
reply
465
views
dds,listc() vs dds(,contrast=list c()
deseq2
updated 4.6 years ago by 42k • written 4.6 years ago by ▴ 30
0
votes
1
reply
953
views
3x2 factorial design
deseq2
updated 4.6 years ago by 42k • written 4.6 years ago by ▴ 30
2
votes
12
replies
1.9k
views
BioFileCache Problem and not linking to ensembldb problem in TxiMeta
Tximeta BioFileCache Ensembldb
updated 4.8 years ago by 25k • written 4.8 years ago by ▴ 30
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