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Comment: C: Convergence of betas, iterations arguments with nbinomialWaldTest
3.7 years ago Mozart ▴ 30
2
votes
2
replies
738
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Convergence of betas, iterations arguments with nbinomialWaldTest
deseq2
updated 3.7 years ago by 42k • written 3.7 years ago by ▴ 30
0
votes
1
reply
814
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SVA for visualisation purposes
sva svaseq surrogate variable analysis
updated 4.2 years ago by 66k • written 4.2 years ago by ▴ 30
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0
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18k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.2 years ago Mozart ▴ 30
1
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1
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18k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
4.2 years ago Mozart ▴ 30
2
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4
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4.8k
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tximport, Kallisto and Deseq2 (quick answer)
kallisto tximport deseq2 counts
5.2 years ago • updated 4.3 years ago Mozart ▴ 30
1
vote
6
replies
956
views
Paired t-test with DESeq2
deseq2
updated 4.7 years ago by ★ 1.4k • written 4.7 years ago by ▴ 30
0
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1
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956
views
Comment: C: Paired t-test with DESeq2
4.7 years ago Mozart ▴ 30
0
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0
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956
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Comment: C: Paired t-test with DESeq2
4.7 years ago Mozart ▴ 30
1
vote
1
reply
1.0k
views
inferential replicates in Kallisto when summarising values via tximport
tximport
updated 5.1 years ago by 42k • written 5.1 years ago by ▴ 30
0
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0
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18k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.1 years ago Mozart ▴ 30
0
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1
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18k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.1 years ago Mozart ▴ 30
0
votes
2
replies
18k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.1 years ago Mozart ▴ 30
0
votes
0
replies
18k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.1 years ago Mozart ▴ 30
10
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18
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18k
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Batch Effect in DESeq2, how to control, how to remove it, how to address biological question
deseq2 batch effect batch
5.1 years ago Mozart ▴ 30
2
votes
1
reply
880
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Multiple groups and two methods to analyse them with DESeq2
deseq2
updated 5.1 years ago by 42k • written 5.1 years ago by ▴ 30
0
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1
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2.3k
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Comment: C: Principal components in DESeq2
5.1 years ago Mozart ▴ 30
0
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1
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2.3k
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Comment: C: Principal components in DESeq2
5.1 years ago Mozart ▴ 30
5
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5
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2.3k
views
Principal components in DESeq2
deseq2
5.1 years ago Mozart ▴ 30
0
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0
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18k
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Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.1 years ago Mozart ▴ 30
0
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1
reply
18k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.1 years ago Mozart ▴ 30
0
votes
0
replies
18k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.1 years ago Mozart ▴ 30
0
votes
1
reply
18k
views
Comment: C: Batch Effect in DESeq2, how to control, how to remove it, how to address biologi
5.1 years ago Mozart ▴ 30
0
votes
0
replies
2.0k
views
Comment: C: adapter trimming paired vs unpaired reads
5.1 years ago Mozart ▴ 30
3
votes
1
reply
1.9k
views
Tximport and pseudo alignment with Kallisto
kallisto tximport deseq2
updated 5.1 years ago by 42k • written 5.1 years ago by ▴ 30
0
votes
1
reply
794
views
DESeq2, how to deal with batch effect: t-test or design matrix?
deseq2 batch sva t-test design matrix
updated 5.2 years ago by 42k • written 5.2 years ago by ▴ 30
1
vote
2
replies
2.0k
views
adapter trimming paired vs unpaired reads
rna seq trimmomatic trimming adapter trimming paired analysis
5.2 years ago Mozart ▴ 30
1
vote
0
replies
4.8k
views
Comment: C: tximport, Kallisto and Deseq2 (quick answer)
5.2 years ago Mozart ▴ 30
0
votes
1
reply
4.8k
views
Comment: C: tximport, Kallisto and Deseq2 (quick answer)
5.2 years ago Mozart ▴ 30
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