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Comment: Comment: Advice on appropriateness of an offset in glmGamPoi/edgeR
6 months ago Gordon Smyth 52k
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Comment: Comment: limma comparison for small sample size and how to get covariance matrix
7 months ago Gordon Smyth 52k
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1.6k
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Comment: Comment: limma comparison for small sample size and how to get covariance matrix
7 months ago Gordon Smyth 52k
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1.6k
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Comment: Comment: limma comparison for small sample size and how to get covariance matrix
7 months ago Gordon Smyth 52k
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1.1k
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Answer: Answer: Advice on appropriateness of an offset in glmGamPoi/edgeR
7 months ago Gordon Smyth 52k
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1.3k
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Comment: Comment: Using both voom and removeBatchEffect, will they double adjust the data or is it
7 months ago Gordon Smyth 52k
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1.3k
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Answer: Answer: Using both voom and removeBatchEffect, will they double adjust the data or is it
7 months ago Gordon Smyth 52k
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667
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Comment: Comment: Warning message when running limma with covariates
7 months ago Gordon Smyth 52k
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667
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Answer: Answer: Warning message when running limma with covariates
7 months ago Gordon Smyth 52k
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1.6k
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Answer: Answer: limma comparison for small sample size and how to get covariance matrix
7 months ago Gordon Smyth 52k
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751
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Answer: Answer: Can I adjust weights by group in dreamlet(), like in voomByGroup(), with a rando
7 months ago Gordon Smyth 52k
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1.4k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
7 months ago Gordon Smyth 52k
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1.4k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
7 months ago Gordon Smyth 52k
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1.4k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
7 months ago Gordon Smyth 52k
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1.4k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
7 months ago Gordon Smyth 52k
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1.4k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
7 months ago Gordon Smyth 52k
0
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1.4k
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Comment: Comment: Limma model.matrix design with batch effect and different life stages proportion
7 months ago Gordon Smyth 52k
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519
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Answer: Answer: Ploting of normalized counts after batch removal
8 months ago Gordon Smyth 52k
1
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0
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535
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Answer: Answer: Subsetting RNAseq data | voomaByGroup()
8 months ago Gordon Smyth 52k
2
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1
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804
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Answer: Answer: How to correctly adjust for gender in edgeR
8 months ago Gordon Smyth 52k
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717
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Comment: Comment: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
8 months ago Gordon Smyth 52k
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717
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Answer: Answer: How to approach time course RNAseq data? Seeing 80% DE genes in timepoint groups
8 months ago Gordon Smyth 52k
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695
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Answer: Answer: Multi-factorial, longitudinal disease progression analysis with unbalanced patie
8 months ago Gordon Smyth 52k
2
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1.0k
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Comment: Comment: Log-cpm values from limma
8 months ago Gordon Smyth 52k
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1.3k
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Comment: Comment: Method to find pathways different between 2 groups
8 months ago Gordon Smyth 52k
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1.3k
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Answer: Answer: Method to find pathways different between 2 groups
9 months ago Gordon Smyth 52k
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947
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Comment: Comment: package goseq seems to be not available on the latest version of R
9 months ago Gordon Smyth 52k
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836
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Answer: Answer: limma Intercept vs No-intercept models completely changing DMR results?
9 months ago Gordon Smyth 52k
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947
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Answer: Answer: package goseq seems to be not available on the latest version of R
9 months ago Gordon Smyth 52k
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430
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Answer: Answer: NEED FOR NESSASORY HELP
9 months ago Gordon Smyth 52k
0
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472
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Answer: Answer: Gene-by-sample covariates in limma
9 months ago Gordon Smyth 52k
3
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2
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1.2k
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Answer: Answer: Why does GSEA on edgeR results for randomized samples give highly significant p-
9 months ago Gordon Smyth 52k
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2.4k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
9 months ago Gordon Smyth 52k
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481
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Answer: Answer: Improving the design matrices vignette in RNAseq123
9 months ago Gordon Smyth 52k
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906
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Answer: Answer: Citation for edgeR user guide
9 months ago Gordon Smyth 52k
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502
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Answer: Answer: limma-voom: Calculate the log-fold change in gene expression within a sample
9 months ago Gordon Smyth 52k
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1
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1.1k
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Comment: Comment: FilterByExpr low counts with small sample size
9 months ago Gordon Smyth 52k
1
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1
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2.4k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
9 months ago Gordon Smyth 52k
2
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2.4k
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Answer: Answer: Why p value inconsistent when using different number of pathway score?
9 months ago Gordon Smyth 52k
1
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0
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2.4k
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Comment: Comment: Why p value inconsistent when using different number of pathway score?
9 months ago Gordon Smyth 52k
0
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1
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668
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Answer: Answer: RNAseq:Technical replicates from different batches
9 months ago Gordon Smyth 52k
0
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0
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650
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Comment: Comment: Finding DEGs by using edgeR
9 months ago Gordon Smyth 52k
3
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1
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1.1k
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Answer: Answer: FilterByExpr low counts with small sample size
9 months ago Gordon Smyth 52k
0
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1
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433
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Answer: Answer: How to make DGEList and design matrix by edgeR package
9 months ago Gordon Smyth 52k
0
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1
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650
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Answer: Answer: Finding DEGs by using edgeR
9 months ago Gordon Smyth 52k
3
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1
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1.0k
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Answer: Answer: Log-cpm values from limma
9 months ago Gordon Smyth 52k
0
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1
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1.1k
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Comment: Comment: FilterByExpr low counts with small sample size
9 months ago Gordon Smyth 52k
0
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0
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2.1k
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Comment: Comment: Batch correction and repeated measures
9 months ago Gordon Smyth 52k
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1
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1.5k
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Comment: Comment: Methylation Analysis experiment design using Limma
9 months ago Gordon Smyth 52k
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1
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1.5k
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Answer: Answer: Methylation Analysis experiment design using Limma
9 months ago Gordon Smyth 52k
5,213 results • Page 3 of 105
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