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266
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Answer: Answer: Check removeBatchEffect effectiveness
4 days ago • updated 3 days ago Gordon Smyth 52k
2
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0
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408
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Answer: Answer: ROAST for small sets
9 days ago Gordon Smyth 52k
1
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0
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1.7k
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Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
10 days ago Gordon Smyth 52k
2
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2
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1.7k
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Answer: Answer: edgeR::cpm() results in negative values from raw counts of 0
10 days ago • updated 8 days ago Gordon Smyth 52k
2
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1
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1.7k
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Comment: Comment: edgeR::cpm() results in negative values from raw counts of 0
10 days ago Gordon Smyth 52k
2
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0
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1.4k
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Answer: Answer: how to use `arrayWeightsQuick()`?
21 days ago Gordon Smyth 52k
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1
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1.4k
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Comment: Comment: how to use `arrayWeightsQuick()`?
22 days ago Gordon Smyth 52k
0
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1
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485
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Answer: Answer: Model performance for spline modelling of RNA-seq timecourses in edgeR
23 days ago • updated 19 days ago Gordon Smyth 52k
2
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0
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1.2k
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Answer: Answer: Improving performance of edgeR and limma while adjusting for multiple confounder
5 weeks ago Gordon Smyth 52k
1
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0
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854
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Comment: Comment: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
6 weeks ago Gordon Smyth 52k
3
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1
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854
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Answer: Answer: Using edgeR::voomLmFit for the analysis of paired clinical RNA-seq samples with
6 weeks ago Gordon Smyth 52k
0
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0
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278
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Answer: Answer: Is it possible to model DNA methylation as a dose response in edgeR?
8 weeks ago Gordon Smyth 52k
1
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1
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1.0k
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Comment: Comment: Use of limma R package with targeted proteomics for DE analysis
9 weeks ago Gordon Smyth 52k
0
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0
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457
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Answer: Answer: cameraPR() non directional test
9 weeks ago Gordon Smyth 52k
1
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1
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1.0k
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Answer: Answer: Use of limma R package with targeted proteomics for DE analysis
10 weeks ago Gordon Smyth 52k
0
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0
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632
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Answer: Answer: To count or not to count multi-overlapping reads?
10 weeks ago Gordon Smyth 52k
1
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1
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656
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Answer: Answer: EdgeR Biological CVs
3 months ago Gordon Smyth 52k
1
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0
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532
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Answer: Answer: Differential variability modelling with vst() expression
3 months ago Gordon Smyth 52k
0
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1
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1.2k
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
3 months ago Gordon Smyth 52k
0
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1
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413
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Answer: Answer: Mean variance curve troubleshoot filtering
3 months ago Gordon Smyth 52k
1
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1
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771
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Comment: Comment: How do I fix an odd voom plot in a combined dataset?
3 months ago Gordon Smyth 52k
0
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1
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1.2k
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
3 months ago Gordon Smyth 52k
0
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1
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1.2k
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
3 months ago Gordon Smyth 52k
2
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1
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771
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Answer: Answer: How do I fix an odd voom plot in a combined dataset?
4 months ago Gordon Smyth 52k
1
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1
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1.2k
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Answer: Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
4 months ago Gordon Smyth 52k
0
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0
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3.5k
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Comment: Comment: edgeR + tximport: calcNormFactors and the usage of offsets
4 months ago Gordon Smyth 52k
0
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1
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580
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Answer: Answer: Cross-validation with multiple control subgroups in limma
4 months ago Gordon Smyth 52k
0
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0
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1.1k
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
4 months ago Gordon Smyth 52k
0
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1
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1.1k
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
4 months ago Gordon Smyth 52k
1
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1
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1.1k
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Answer: Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
4 months ago Gordon Smyth 52k
0
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0
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1.4k
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Answer: Answer: Limma - using both array and spot weights in lmFit
4 months ago Gordon Smyth 52k
1
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0
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2.1k
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Comment: Comment: Feature Counts - potential bug with outfile.jcounts
4 months ago Gordon Smyth 52k
1
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2
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2.1k
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Answer: Answer: Feature Counts - potential bug with outfile.jcounts
4 months ago Gordon Smyth 52k
0
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0
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652
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Answer: Answer: Feature Counts -R XS Read Assignment Tag
4 months ago Gordon Smyth 52k
0
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1
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444
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Answer: Answer: Advice needed: Using limma for differential pathway analysis with continuous dis
4 months ago Gordon Smyth 52k
3
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1
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1.1k
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Answer: Answer: RSubread output significantly different from bash Subread output
4 months ago Gordon Smyth 52k
0
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1
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625
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Answer: Answer: sva: get a sv for RIN scores
4 months ago Gordon Smyth 52k
0
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1
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1.2k
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Comment: Comment: Differential Expression Genes as Independent Variables
4 months ago Gordon Smyth 52k
1
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2
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537
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Answer: Answer: contrast matrix design for a continuous variable
5 months ago Gordon Smyth 52k
0
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1
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1.2k
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Comment: Comment: Differential Expression Genes as Independent Variables
5 months ago Gordon Smyth 52k
2
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3
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806
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Answer: Answer: Crossover design with limma
5 months ago • updated 4 months ago Gordon Smyth 52k
0
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1
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1.2k
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Answer: Answer: Differential Expression Genes as Independent Variables
5 months ago Gordon Smyth 52k
1
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1
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2.9k
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
5 months ago Gordon Smyth 52k
1
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1
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2.9k
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Answer: Answer: What type of counts data to import for performing Isoform analysis in edgeR
5 months ago Gordon Smyth 52k
0
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1
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2.9k
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
5 months ago Gordon Smyth 52k
1
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0
replies
1.1k
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Comment: Comment: ANOVA like approach of edgeR
5 months ago Gordon Smyth 52k
3
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1
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1.1k
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Answer: Answer: ANOVA like approach of edgeR
5 months ago Gordon Smyth 52k
0
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1
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569
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Answer: Answer: Create Illmina bead summary data
5 months ago Gordon Smyth 52k
1
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0
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699
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Comment: Comment: Is it recommended to analyze different tissues together when using edgeR
5 months ago Gordon Smyth 52k
2
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1
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699
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Answer: Answer: Is it recommended to analyze different tissues together when using edgeR
5 months ago Gordon Smyth 52k
5,229 results • Page 1 of 105
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