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Answer: Answer: EdgeR Biological CVs
12 days ago • updated 8 days ago Gordon Smyth 52k
1
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0
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320
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Answer: Answer: Differential variability modelling with vst() expression
22 days ago Gordon Smyth 52k
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1
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896
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
26 days ago Gordon Smyth 52k
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1
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264
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Answer: Answer: Mean variance curve troubleshoot filtering
26 days ago Gordon Smyth 52k
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1
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562
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Comment: Comment: How do I fix an odd voom plot in a combined dataset?
27 days ago • updated 26 days ago Gordon Smyth 52k
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1
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896
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
28 days ago • updated 26 days ago Gordon Smyth 52k
0
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1
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896
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Comment: Comment: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
29 days ago • updated 26 days ago Gordon Smyth 52k
2
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1
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562
views
Answer: Answer: How do I fix an odd voom plot in a combined dataset?
4 weeks ago Gordon Smyth 52k
1
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1
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896
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Answer: Answer: Incorporating Salmon offset matrix into Wilcoxon DEG analysis
4 weeks ago Gordon Smyth 52k
0
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0
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3.2k
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Comment: Comment: edgeR + tximport: calcNormFactors and the usage of offsets
4 weeks ago Gordon Smyth 52k
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484
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Answer: Answer: Cross-validation with multiple control subgroups in limma
5 weeks ago Gordon Smyth 52k
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0
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842
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
6 weeks ago Gordon Smyth 52k
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1
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842
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Comment: Comment: Normalizing batch effects using technical replicates for DGE analysis between tw
6 weeks ago Gordon Smyth 52k
1
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1
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842
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Answer: Answer: Normalizing batch effects using technical replicates for DGE analysis between tw
6 weeks ago Gordon Smyth 52k
0
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0
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1.4k
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Answer: Answer: Limma - using both array and spot weights in lmFit
6 weeks ago Gordon Smyth 52k
1
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0
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1.1k
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Comment: Comment: Feature Counts - potential bug with outfile.jcounts
7 weeks ago Gordon Smyth 52k
1
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2
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1.1k
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Answer: Answer: Feature Counts - potential bug with outfile.jcounts
7 weeks ago Gordon Smyth 52k
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0
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533
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Answer: Answer: Feature Counts -R XS Read Assignment Tag
7 weeks ago Gordon Smyth 52k
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1
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327
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Answer: Answer: Advice needed: Using limma for differential pathway analysis with continuous dis
7 weeks ago Gordon Smyth 52k
3
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1
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754
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Answer: Answer: RSubread output significantly different from bash Subread output
7 weeks ago Gordon Smyth 52k
0
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1
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497
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Answer: Answer: sva: get a sv for RIN scores
8 weeks ago • updated 7 weeks ago Gordon Smyth 52k
0
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1
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958
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Comment: Comment: Differential Expression Genes as Independent Variables
8 weeks ago Gordon Smyth 52k
1
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2
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432
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Answer: Answer: contrast matrix design for a continuous variable
8 weeks ago Gordon Smyth 52k
0
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1
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958
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Comment: Comment: Differential Expression Genes as Independent Variables
9 weeks ago Gordon Smyth 52k
2
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3
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645
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Answer: Answer: Crossover design with limma
9 weeks ago • updated 6 weeks ago Gordon Smyth 52k
0
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1
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958
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Answer: Answer: Differential Expression Genes as Independent Variables
9 weeks ago Gordon Smyth 52k
1
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1
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2.6k
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
9 weeks ago • updated 8 weeks ago Gordon Smyth 52k
1
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1
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2.6k
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Answer: Answer: What type of counts data to import for performing Isoform analysis in edgeR
9 weeks ago • updated 8 weeks ago Gordon Smyth 52k
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1
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2.6k
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Comment: Comment: What type of counts data to import for performing Isoform analysis in edgeR
9 weeks ago • updated 8 weeks ago Gordon Smyth 52k
1
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0
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942
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Comment: Comment: ANOVA like approach of edgeR
9 weeks ago Gordon Smyth 52k
3
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1
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942
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Answer: Answer: ANOVA like approach of edgeR
10 weeks ago Gordon Smyth 52k
0
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1
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457
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Answer: Answer: Create Illmina bead summary data
10 weeks ago • updated 9 weeks ago Gordon Smyth 52k
1
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0
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582
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Comment: Comment: Is it recommended to analyze different tissues together when using edgeR
10 weeks ago Gordon Smyth 52k
2
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1
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582
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Answer: Answer: Is it recommended to analyze different tissues together when using edgeR
10 weeks ago Gordon Smyth 52k
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0
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314
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Answer: Answer: Are unequal sample sizes in differential gene expression (DGE) analysis a proble
10 weeks ago Gordon Smyth 52k
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1
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1.8k
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Comment: Comment: limma technical repeat correction
10 weeks ago Gordon Smyth 52k
2
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0
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601
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Answer: Answer: Using voom-transformed counts for unsupervised analyses (PCA, Random Forest, Ela
10 weeks ago Gordon Smyth 52k
0
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0
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219
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Answer: Answer: List of DEGs belonging to an Agilent-single color microarray experiment using Li
10 weeks ago Gordon Smyth 52k
1
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1
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926
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Answer: Answer: [How to construct a model.matrix ]
11 weeks ago • updated 10 weeks ago Gordon Smyth 52k
1
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1
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687
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Comment: Comment: Limma- Print-tip loess normalisation-printer layout information does not match M
11 weeks ago Gordon Smyth 52k
2
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1
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687
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Answer: Answer: Limma- Print-tip loess normalisation-printer layout information does not match M
11 weeks ago Gordon Smyth 52k
1
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1
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1.7k
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Comment: Comment: Differential Expression Analysis with unbalanced batches without replication bet
12 weeks ago Gordon Smyth 52k
1
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1
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1.7k
views
Answer: Answer: Differential Expression Analysis with unbalanced batches without replication bet
12 weeks ago • updated 11 weeks ago Gordon Smyth 52k
1
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1
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1.3k
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Answer: Answer: Combining RNAseq and microarray data using edgeR/limma-voom
12 weeks ago Gordon Smyth 52k
1
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1
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983
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Answer: Answer: Consistent Decimals In Data After Antibody Array Background Correction Using Lim
12 weeks ago Gordon Smyth 52k
1
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1
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1.8k
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Comment: Comment: limma technical repeat correction
3 months ago • updated 12 weeks ago Gordon Smyth 52k
1
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1
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1.8k
views
Comment: Comment: limma technical repeat correction
3 months ago Gordon Smyth 52k
0
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1
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1.8k
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Comment: Comment: limma technical repeat correction
3 months ago Gordon Smyth 52k
2
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0
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842
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Comment: Comment: Analysis of 2*4 factorial design
3 months ago Gordon Smyth 52k
1
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0
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2.0k
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Comment: Comment: What benchmark should I use for setting the EdgeR filterByExpr min.count paramet
3 months ago Gordon Smyth 52k
5,213 results • Page 1 of 105
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