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851
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ACMG Annotations for Variants in R
ACMG SNP
2.4 years ago hamza_karakurt ▴ 60
0
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0
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780
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ASpli package gives an error in jCounts function and suggest a parameter change in granges()
ASpli alterna AlternativeSplicing
2.8 years ago hamza_karakurt ▴ 60
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0
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1.3k
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Comment: Comment: ASpli error message
2.8 years ago hamza_karakurt ▴ 60
0
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0
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1.3k
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Comment: Comment: ASpli error message
2.8 years ago hamza_karakurt ▴ 60
0
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0
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945
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Creating a stable batch-corrected scRNA-Seq data with multiple datasets and multiple integrations
scater singlecell scran BatchEffect
4.1 years ago hamza_karakurt ▴ 60
2
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0
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651
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Quality Metrics for Graph Clustering for Biological Networks
R protein-interaction networks network
4.5 years ago hamza_karakurt ▴ 60
2
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1
reply
2.3k
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Batch Corrections (MNN) with TPM values
scRNA-Seq scater scran rna-seq MNN
updated 5.1 years ago by ★ 28k • written 5.1 years ago by ▴ 60
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1
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1.0k
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emptyDrops result is full NAs
scran dropletUtils scater scRNA-Seq
5.5 years ago hamza_karakurt ▴ 60
0
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1
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6.9k
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Comment: C: Differential Expression Analysis between conditions of single cell RNA-Seq
5.6 years ago hamza_karakurt ▴ 60
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2
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3.0k
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Comment: C: Usage of doubletCells() function before or after the batch correction?
5.6 years ago hamza_karakurt ▴ 60
8
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4
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3.0k
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Usage of doubletCells() function before or after the batch correction?
scater scran scRNA-Seq doubletCells
updated 5.6 years ago by ★ 28k • written 5.6 years ago by ▴ 60
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1
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2.1k
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Comment: C: Using SC3 with batch corrected MNN values
5.6 years ago hamza_karakurt ▴ 60
0
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1
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2.1k
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Comment: C: Using SC3 with batch corrected MNN values
5.6 years ago hamza_karakurt ▴ 60
4
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5
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2.1k
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Using SC3 with batch corrected MNN values
SC3 Scater Scran scRNA-Seq Batch Correction
updated 5.6 years ago by ▴ 150 • written 5.6 years ago by ▴ 60
1
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2
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1.7k
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Dunn Index for Clusters from scRNA-Seq
scRNA-Seq clustering scater scran dunn index
updated 5.7 years ago by ★ 28k • written 5.7 years ago by ▴ 60
5
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5
replies
6.9k
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Differential Expression Analysis between conditions of single cell RNA-Seq
deseq2 scRNA-Seq RNA-Seq differential expression analysis
updated 5.7 years ago by 43k • written 5.7 years ago by ▴ 60
0
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1
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1.8k
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Comment: C: Modularity values of clusters and Differential Expression in scRNA-Seq
5.7 years ago hamza_karakurt ▴ 60
0
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1
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1.8k
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Comment: C: Modularity values of clusters and Differential Expression in scRNA-Seq
5.7 years ago hamza_karakurt ▴ 60
2
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5
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1.8k
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Modularity values of clusters and Differential Expression in scRNA-Seq
scater scran igraph scRNA-Seq rots
updated 5.7 years ago by ★ 28k • written 5.7 years ago by ▴ 60
3
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3
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2.0k
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Enrichment Analysis with only GeneSymbols
R GSEA rna-seq scRna-Seq
updated 5.7 years ago by ★ 3.0k • written 5.7 years ago by ▴ 60
0
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0
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4.5k
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Comment: C: Adding labels on clusters in a t-SNE plot and changing colors
5.8 years ago hamza_karakurt ▴ 60
2
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5
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4.5k
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Adding labels on clusters in a t-SNE plot and changing colors
scran scater Rtsne ggplot2 scRNA-Seq
updated 2.3 years ago by ▴ 60 • written 5.8 years ago by ▴ 60
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0
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2.7k
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Comment: C: Silhouette Plots for Clustering Quality (Multiple Algorithm)
5.8 years ago hamza_karakurt ▴ 60
0
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1
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2.7k
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Comment: C: Silhouette Plots for Clustering Quality (Multiple Algorithm)
5.8 years ago hamza_karakurt ▴ 60
2
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4
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2.7k
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Silhouette Plots for Clustering Quality (Multiple Algorithm)
scRNA-Seq RNA-Seq Clustering Silhouette Plot
updated 5.8 years ago by ★ 28k • written 5.8 years ago by ▴ 60
0
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1
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2.9k
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Deconvolution Method in Seurat and convert from SingleCellExperiment
scater seurat singlecellexperiment rnaseq
updated 5.9 years ago by 51k • written 5.9 years ago by ▴ 60
0
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0
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1.8k
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Comment: C: Seurat to SingleCellExperiment Converting error in MAC
6.0 years ago hamza_karakurt ▴ 60
4
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2
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1.8k
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Seurat to SingleCellExperiment Converting error in MAC
singlecellexperiment single-cell rnaseq
updated 6.0 years ago by ★ 13k • written 6.0 years ago by ▴ 60
0
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1
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2.8k
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Comment: C: newSCESet and SingleCellExperiment basic differences and TMM Normalization
6.1 years ago hamza_karakurt ▴ 60
1
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5
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2.8k
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newSCESet and SingleCellExperiment basic differences and TMM Normalization
singlecellexperiment single-cell rnaseq seurat scater
6.1 years ago hamza_karakurt ▴ 60
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