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0
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1
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3.1k
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Comment: Comment: WGCNA parallelization multi thread for blockwiseModules and TOMsimilarity
12 weeks ago Arindam ▴ 80
0
votes
0
replies
429
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Comment: Comment: KEGGgraph result difference
3 months ago Arindam ▴ 80
1
vote
2
replies
429
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KEGGgraph result difference
igraph KEGGgraph RCy3 GraphNEL
4 months ago • updated 3 months ago Arindam ▴ 80
0
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2
replies
4.2k
views
Dealing with multi-overlapping and multi-mapping reads
RNA-seq featureCounts ht-seq
written 4.5 years ago by ▴ 80
0
votes
1
reply
1.7k
views
Gene level methylation values
methylation methylKit bsseq
updated 3.3 years ago by ▴ 10 • written 3.5 years ago by ▴ 80
0
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1
reply
3.5k
views
Comment: Comment: Map uniprot entry name to accession number
3.8 years ago Arindam ▴ 80
3
votes
2
replies
6.6k
views
Calculation of module membership in WGCNA
WGCNA RNA-seq ModuleMembership Network Hub gene
updated 2.7 years ago by ▴ 10 • written 4.4 years ago by ▴ 80
0
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0
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2.7k
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Comment: C: Soft-threshold in WGCNA
4.4 years ago Arindam ▴ 80
0
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2
replies
2.7k
views
Soft-threshold in WGCNA
wgcna network bicor threshold
updated 4.4 years ago by ★ 3.0k • written 4.4 years ago by ▴ 80
1
vote
0
replies
15k
views
Comment: C: WGCNA Hub Gene Selection Method
4.8 years ago Arindam ▴ 80
0
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0
replies
9.5k
views
Comment: C: WGCNA export to cytoscape
5.0 years ago Arindam ▴ 80
0
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1
reply
19k
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Comment: C: WGCNA: Understanding module-trait correlations
5.1 years ago Arindam ▴ 80
0
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0
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2.3k
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Comment: C: Case-control study using WGCNA
5.1 years ago Arindam ▴ 80
0
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1
reply
2.3k
views
Comment: C: Case-control study using WGCNA
5.1 years ago Arindam ▴ 80
2
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4
replies
2.3k
views
Case-control study using WGCNA
wgcna network rna-seq
5.1 years ago Arindam ▴ 80
0
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0
replies
2.6k
views
Comment: C: Removal of batch effects from RNA-seq data for WGCNA
5.2 years ago Arindam ▴ 80
0
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1
reply
2.6k
views
Comment: C: Removal of batch effects from RNA-seq data for WGCNA
5.2 years ago Arindam ▴ 80
1
vote
4
replies
2.6k
views
Removal of batch effects from RNA-seq data for WGCNA
limma deseq2 wgcna RUVseq
5.2 years ago Arindam ▴ 80
0
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0
replies
7.7k
views
Comment: C: WGCNA: 1) low soft thresholding power, 2) large modules, 3) best correlation for
5.2 years ago Arindam ▴ 80
0
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0
replies
1.8k
views
Comment: C: Difference in PCA variance calculation in DESeq2
5.3 years ago Arindam ▴ 80
0
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1
reply
1.8k
views
Comment: C: Difference in PCA variance calculation in DESeq2
5.3 years ago Arindam ▴ 80
1
vote
4
replies
1.8k
views
Difference in PCA variance calculation in DESeq2
deseq2 pca hclust
updated 5.3 years ago by 43k • written 5.3 years ago by ▴ 80
2
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1
reply
5.6k
views
Comment: C: tximport transcript missing
5.3 years ago Arindam ▴ 80
2
votes
3
replies
1.3k
views
Design for introducing batch effect in DESeq2
deseq2 combat batch effect rna-seq edger
updated 5.4 years ago by ★ 1.4k • written 5.4 years ago by ▴ 80
0
votes
1
reply
956
views
How to arrange multiple plots into one page in NOISeq?
noiseq RNA-seq quality control
updated 8 months ago by • 0 • written 5.4 years ago by ▴ 80
0
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1
reply
1.2k
views
Comment: C: WGCNA from different lengths RNAseq read
5.7 years ago Arindam ▴ 80
4
votes
3
replies
1.2k
views
WGCNA from different lengths RNAseq read
wgcna network co-expression rnaseq
updated 5.7 years ago by ★ 3.0k • written 5.7 years ago by ▴ 80
0
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0
replies
13k
views
Comment: C: DESeq2 FPKM normalization
6.3 years ago Arindam ▴ 80
0
votes
1
reply
20k
views
Comment: C: log2FoldChange calculation in DESeq2 output
6.5 years ago Arindam ▴ 80
0
votes
1
reply
6.7k
views
Comment: C: "Over-correction" in the size-factors of the DESeq2 package
6.5 years ago Arindam ▴ 80
0
votes
2
replies
2.7k
views
What are the different strategies to filter out low count genes?
rnaseq deseq2 differential gene expression
updated 6.5 years ago by ★ 13k • written 6.5 years ago by ▴ 80
0
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0
replies
6.8k
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Comment: C: Too many (?) differentially expressed genes - edgeR and DESeq
6.5 years ago Arindam ▴ 80
0
votes
2
replies
8.2k
views
Comment: C: DESeq2 vs Ballgown results
6.5 years ago Arindam ▴ 80
0
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0
replies
7.4k
views
Comment: C: Ballgown up and down regulated genes
6.8 years ago Arindam ▴ 80
1
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1
reply
1.6k
views
What is the exact formula for the calculation of Fold Change (FC), p-val and q-val in Ballgown stattest?
ballgown stattest fold change
updated 6.9 years ago by 67k • written 6.9 years ago by ▴ 80
1
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0
replies
3.8k
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Comment: C: How fold change is calculated in Ballgown?
6.9 years ago Arindam ▴ 80
0
votes
0
replies
3.8k
views
Comment: C: How fold change is calculated in Ballgown?
6.9 years ago Arindam ▴ 80
37 results • Page 1 of 1
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