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1.5k
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Comment:
Comment: Batch effect between biological replicates
21 months ago
gtechbio
▴ 10
1
vote
2
replies
1.5k
views
Batch effect between biological replicates
BatchEffect
DESeq2
21 months ago
gtechbio
▴ 10
0
votes
1
reply
2.3k
views
Comment:
Comment: DESeq2 Error in checkContrast(contrast, resNames) : when using list()
2.4 years ago
gtechbio
▴ 10
0
votes
1
reply
2.3k
views
Comment:
Comment: DESeq2 Error in checkContrast(contrast, resNames) : when using list()
2.4 years ago
gtechbio
▴ 10
0
votes
1
reply
2.3k
views
Comment:
Comment: DESeq2 Error in checkContrast(contrast, resNames) : when using list()
2.4 years ago
gtechbio
▴ 10
0
votes
7
replies
2.3k
views
DESeq2 Error in checkContrast(contrast, resNames) : when using list()
DESeq2
updated 2.4 years ago by
Michael Love
43k • written 2.4 years ago by
gtechbio
▴ 10
0
votes
0
replies
1.2k
views
Comment:
Comment: Time course RNA seq with DESeq2
2.5 years ago
gtechbio
▴ 10
0
votes
1
reply
610
views
DESeq2 analysis with 3 factors
DESeq2
updated 2.5 years ago by
Michael Love
43k • written 2.5 years ago by
gtechbio
▴ 10
0
votes
1
reply
1.0k
views
Comment:
C: collapseReplicates changes the order of the original dataframe in DESeq2
5.5 years ago
gtechbio
▴ 10
2
votes
3
replies
1.0k
views
collapseReplicates changes the order of the original dataframe in DESeq2
deseq2
collapseReplicates
updated 5.5 years ago by
Michael Love
43k • written 5.5 years ago by
gtechbio
▴ 10
0
votes
0
replies
985
views
Comment:
C: using DESeq2 v 1.18 in Bioconductor v. 3.8
5.9 years ago
gtechbio
▴ 10
1
vote
2
replies
985
views
using DESeq2 v 1.18 in Bioconductor v. 3.8
deseq2
bioconductor
updated 5.9 years ago by
shepherl
4.1k • written 5.9 years ago by
gtechbio
▴ 10
0
votes
0
replies
919
views
removing confounding batch efffect with RUVg
RUVg
RNAseq
batch effect
5.9 years ago
gtechbio
▴ 10
0
votes
1
reply
1000
views
Comment:
C: Accounting for batch effect in DESseq2
5.9 years ago
gtechbio
▴ 10
0
votes
1
reply
1000
views
Comment:
C: Accounting for batch effect in DESseq2
5.9 years ago
gtechbio
▴ 10
3
votes
5
replies
1000
views
Accounting for batch effect in DESseq2
deseq2
batch_effect
updated 5.9 years ago by
Michael Love
43k • written 5.9 years ago by
gtechbio
▴ 10
0
votes
0
replies
1.7k
views
Comment:
C: DiffBind confuses coordinates of peaks
6.3 years ago
gtechbio
▴ 10
2
votes
4
replies
1.7k
views
DiffBind confuses coordinates of peaks
atacseq
diffbind
updated 6.4 years ago by
Rory Stark
★ 5.2k • written 6.4 years ago by
gtechbio
▴ 10
0
votes
0
replies
1.7k
views
Comment:
C: DiffBind confuses coordinates of peaks
6.4 years ago
gtechbio
▴ 10
0
votes
1
reply
1.4k
views
Comment:
C: Allele-specific expression with different gene lenghts
6.8 years ago
gtechbio
▴ 10
0
votes
1
reply
1.4k
views
Comment:
C: Allele-specific expression with different gene lenghts
6.8 years ago
gtechbio
▴ 10
0
votes
1
reply
1.4k
views
Comment:
C: Allele-specific expression with different gene lenghts
6.8 years ago
gtechbio
▴ 10
0
votes
0
replies
1.4k
views
Comment:
C: Allele-specific expression with different gene lenghts
6.8 years ago
gtechbio
▴ 10
0
votes
1
reply
1.4k
views
Comment:
C: Allele-specific expression with different gene lenghts
6.8 years ago
gtechbio
▴ 10
1
vote
10
replies
1.4k
views
Allele-specific expression with different gene lenghts
deseq2
allele-specific-expression
rnaseq
updated 6.8 years ago by
Michael Love
43k • written 6.8 years ago by
gtechbio
▴ 10
0
votes
1
reply
1.7k
views
Comment:
C: Time course DE analysis in DESeq2 with Wald test
7.3 years ago
gtechbio
▴ 10
0
votes
1
reply
1.7k
views
Comment:
C: Time course DE analysis in DESeq2 with Wald test
7.3 years ago
gtechbio
▴ 10
1
vote
5
replies
1.7k
views
Time course DE analysis in DESeq2 with Wald test
DESeq2
time-series
updated 7.3 years ago by
Michael Love
43k • written 7.3 years ago by
gtechbio
▴ 10
0
votes
1
reply
1.3k
views
Comment:
C: DESeq2 for ASE
7.4 years ago
gtechbio
▴ 10
1
vote
3
replies
1.3k
views
DESeq2 for ASE
DESEQ2
ASE
diploid-genome
updated 7.4 years ago by
Michael Love
43k • written 7.4 years ago by
gtechbio
▴ 10
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